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Iron in PDB 5fny: Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe

Enzymatic activity of Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe

All present enzymatic activity of Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe:
1.7.2.5;

Protein crystallography data

The structure of Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe, PDB code: 5fny was solved by F.-C.Lo, C.-C.Hsieh, M.Maestre-Reyna, C.-Y.Chen, T.-P.Ko, Y.-C.Horng, Y.-C.Lai, Y.-W.Chiang, C.-M.Chou, C.-H.Chiang, W.-N.Huang, W.-F.Liaw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.17 / 2.01
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 92.024, 86.495, 51.159, 90.00, 90.00, 90.00
R / Rfree (%) 18.874 / 23.476

Other elements in 5fny:

The structure of Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe (pdb code 5fny). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe, PDB code: 5fny:

Iron binding site 1 out of 1 in 5fny

Go back to Iron Binding Sites List in 5fny
Iron binding site 1 out of 1 in the Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Low Solvent Content Crystal Form of Zn Containing Iron Sulfur Cluster Repair Protein Ytfe within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1221

b:28.6
occ:1.00
 O B:O2022 1.8 29.0 1.0
OE2 B:GLU208 2.0 33.3 1.0
NE2 B:HIS204 2.1 30.9 1.0
NE2 B:HIS84 2.1 30.0 1.0
OE1 B:GLU133 2.2 39.0 1.0
CD B:GLU208 2.9 33.2 1.0
CE1 B:HIS204 2.9 30.7 1.0
CE1 B:HIS84 3.1 29.6 1.0
ZN B:ZN1222 3.1 38.6 1.0
OE1 B:GLU208 3.1 34.0 1.0
CD2 B:HIS84 3.1 29.6 1.0
CD B:GLU133 3.2 38.9 1.0
CD2 B:HIS204 3.3 29.8 1.0
OE2 B:GLU133 3.5 38.7 1.0
CG2 B:ILE79 3.9 33.2 1.0
ND1 B:HIS204 4.1 30.8 1.0
ND1 B:HIS84 4.2 30.1 1.0
CG B:HIS84 4.3 29.4 1.0
CG B:GLU208 4.3 32.3 1.0
CZ B:PHE138 4.3 32.5 1.0
CG B:HIS204 4.3 29.6 1.0
NE2 B:HIS129 4.4 40.0 1.0
CD2 B:HIS129 4.5 39.8 1.0
CG B:GLU133 4.5 36.6 1.0
CG B:MET130 4.7 37.8 1.0
CE2 B:PHE138 4.8 32.3 1.0
NE2 B:HIS160 4.9 34.1 1.0
CB B:GLU133 4.9 37.1 1.0

Reference:

F.-C.Lo, C.-C.Hsieh, M.Maestre-Reyna, C.-Y.Chen, T.-P.Ko, Y.-C.Horng, Y.-C.Lai, Y.-W.Chiang, C.-M.Chou, C.-H.Chiang, W.-N.Huang, W.-F.Liaw. Crystal Structure of the Repair of Iron Centers Protein Ytfe and Its Interaction with No Chemistry V. 22 9768 2016.
ISSN: ISSN 0947-6539
PubMed: 27246459
DOI: 10.1002/CHEM.201600990
Page generated: Tue Aug 5 21:32:57 2025

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