Atomistry » Iron » PDB 5jsh-5kja » 5juy
Atomistry »
  Iron »
    PDB 5jsh-5kja »
      5juy »

Iron in PDB 5juy: Active Human Apoptosome with Procaspase-9

Enzymatic activity of Active Human Apoptosome with Procaspase-9

All present enzymatic activity of Active Human Apoptosome with Procaspase-9:
3.4.22.62;

Iron Binding Sites:

The binding sites of Iron atom in the Active Human Apoptosome with Procaspase-9 (pdb code 5juy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 7 binding sites of Iron where determined in the Active Human Apoptosome with Procaspase-9, PDB code: 5juy:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7;

Iron binding site 1 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 1 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe500

b:50.0
occ:1.00
FE H:HEC500 0.0 50.0 1.0
ND H:HEC500 2.0 50.0 1.0
NC H:HEC500 2.0 50.0 1.0
NA H:HEC500 2.1 50.0 1.0
NB H:HEC500 2.1 50.0 1.0
NE2 H:HIS18 2.6 50.0 1.0
CE1 H:HIS18 2.9 50.0 1.0
SD H:MET80 3.0 50.0 1.0
C1B H:HEC500 3.0 50.0 1.0
C1D H:HEC500 3.0 50.0 1.0
C4C H:HEC500 3.0 50.0 1.0
C4B H:HEC500 3.0 50.0 1.0
C4A H:HEC500 3.1 50.0 1.0
C4D H:HEC500 3.1 50.0 1.0
C1A H:HEC500 3.1 50.0 1.0
C1C H:HEC500 3.1 50.0 1.0
CE H:MET80 3.4 50.0 1.0
CHD H:HEC500 3.4 50.0 1.0
CHB H:HEC500 3.4 50.0 1.0
CHA H:HEC500 3.4 50.0 1.0
CHC H:HEC500 3.4 50.0 1.0
CG H:MET80 3.5 50.0 1.0
CD2 H:HIS18 3.9 50.0 1.0
ND1 H:HIS18 4.2 50.0 1.0
C2B H:HEC500 4.2 50.0 1.0
C3B H:HEC500 4.2 50.0 1.0
C3A H:HEC500 4.3 50.0 1.0
C2A H:HEC500 4.3 50.0 1.0
C2D H:HEC500 4.3 50.0 1.0
C3C H:HEC500 4.3 50.0 1.0
C2C H:HEC500 4.3 50.0 1.0
C3D H:HEC500 4.3 50.0 1.0
CB H:MET80 4.3 50.0 1.0
CG H:HIS18 4.7 50.0 1.0

Iron binding site 2 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 2 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe500

b:50.0
occ:1.00
FE I:HEC500 0.0 50.0 1.0
ND I:HEC500 2.0 50.0 1.0
NC I:HEC500 2.0 50.0 1.0
NA I:HEC500 2.1 50.0 1.0
NB I:HEC500 2.1 50.0 1.0
NE2 I:HIS18 2.6 50.0 1.0
CE1 I:HIS18 2.9 50.0 1.0
SD I:MET80 3.0 50.0 1.0
C1B I:HEC500 3.0 50.0 1.0
C1D I:HEC500 3.0 50.0 1.0
C4C I:HEC500 3.0 50.0 1.0
C4B I:HEC500 3.0 50.0 1.0
C4A I:HEC500 3.1 50.0 1.0
C4D I:HEC500 3.1 50.0 1.0
C1A I:HEC500 3.1 50.0 1.0
C1C I:HEC500 3.1 50.0 1.0
CE I:MET80 3.4 50.0 1.0
CHD I:HEC500 3.4 50.0 1.0
CHB I:HEC500 3.4 50.0 1.0
CHA I:HEC500 3.4 50.0 1.0
CHC I:HEC500 3.4 50.0 1.0
CG I:MET80 3.5 50.0 1.0
CD2 I:HIS18 3.9 50.0 1.0
ND1 I:HIS18 4.2 50.0 1.0
C2B I:HEC500 4.2 50.0 1.0
C3B I:HEC500 4.2 50.0 1.0
C3A I:HEC500 4.3 50.0 1.0
C2A I:HEC500 4.3 50.0 1.0
C2D I:HEC500 4.3 50.0 1.0
C3C I:HEC500 4.3 50.0 1.0
C2C I:HEC500 4.3 50.0 1.0
C3D I:HEC500 4.3 50.0 1.0
CB I:MET80 4.3 50.0 1.0
CG I:HIS18 4.7 50.0 1.0

Iron binding site 3 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 3 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe500

b:50.0
occ:1.00
FE J:HEC500 0.0 50.0 1.0
ND J:HEC500 2.0 50.0 1.0
NC J:HEC500 2.0 50.0 1.0
NA J:HEC500 2.1 50.0 1.0
NB J:HEC500 2.1 50.0 1.0
NE2 J:HIS18 2.6 50.0 1.0
CE1 J:HIS18 2.9 50.0 1.0
SD J:MET80 3.0 50.0 1.0
C1B J:HEC500 3.0 50.0 1.0
C1D J:HEC500 3.0 50.0 1.0
C4C J:HEC500 3.0 50.0 1.0
C4B J:HEC500 3.0 50.0 1.0
C4A J:HEC500 3.1 50.0 1.0
C4D J:HEC500 3.1 50.0 1.0
C1A J:HEC500 3.1 50.0 1.0
C1C J:HEC500 3.1 50.0 1.0
CE J:MET80 3.4 50.0 1.0
CHD J:HEC500 3.4 50.0 1.0
CHB J:HEC500 3.4 50.0 1.0
CHA J:HEC500 3.4 50.0 1.0
CHC J:HEC500 3.4 50.0 1.0
CG J:MET80 3.5 50.0 1.0
CD2 J:HIS18 3.9 50.0 1.0
ND1 J:HIS18 4.2 50.0 1.0
C2B J:HEC500 4.2 50.0 1.0
C3B J:HEC500 4.2 50.0 1.0
C3A J:HEC500 4.3 50.0 1.0
C2A J:HEC500 4.3 50.0 1.0
C2D J:HEC500 4.3 50.0 1.0
C3C J:HEC500 4.3 50.0 1.0
C2C J:HEC500 4.3 50.0 1.0
C3D J:HEC500 4.3 50.0 1.0
CB J:MET80 4.3 50.0 1.0
CG J:HIS18 4.7 50.0 1.0

Iron binding site 4 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 4 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe500

b:50.0
occ:1.00
FE K:HEC500 0.0 50.0 1.0
ND K:HEC500 2.0 50.0 1.0
NC K:HEC500 2.0 50.0 1.0
NA K:HEC500 2.1 50.0 1.0
NB K:HEC500 2.1 50.0 1.0
NE2 K:HIS18 2.6 50.0 1.0
CE1 K:HIS18 2.9 50.0 1.0
SD K:MET80 3.0 50.0 1.0
C1B K:HEC500 3.0 50.0 1.0
C1D K:HEC500 3.0 50.0 1.0
C4C K:HEC500 3.0 50.0 1.0
C4B K:HEC500 3.0 50.0 1.0
C4A K:HEC500 3.1 50.0 1.0
C4D K:HEC500 3.1 50.0 1.0
C1A K:HEC500 3.1 50.0 1.0
C1C K:HEC500 3.1 50.0 1.0
CE K:MET80 3.4 50.0 1.0
CHD K:HEC500 3.4 50.0 1.0
CHB K:HEC500 3.4 50.0 1.0
CHA K:HEC500 3.4 50.0 1.0
CHC K:HEC500 3.4 50.0 1.0
CG K:MET80 3.5 50.0 1.0
CD2 K:HIS18 3.9 50.0 1.0
ND1 K:HIS18 4.2 50.0 1.0
C2B K:HEC500 4.2 50.0 1.0
C3B K:HEC500 4.2 50.0 1.0
C3A K:HEC500 4.3 50.0 1.0
C2A K:HEC500 4.3 50.0 1.0
C2D K:HEC500 4.3 50.0 1.0
C3C K:HEC500 4.3 50.0 1.0
C2C K:HEC500 4.3 50.0 1.0
C3D K:HEC500 4.3 50.0 1.0
CB K:MET80 4.3 50.0 1.0
CG K:HIS18 4.7 50.0 1.0

Iron binding site 5 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 5 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Fe500

b:50.0
occ:1.00
FE L:HEC500 0.0 50.0 1.0
ND L:HEC500 2.0 50.0 1.0
NC L:HEC500 2.0 50.0 1.0
NA L:HEC500 2.1 50.0 1.0
NB L:HEC500 2.1 50.0 1.0
NE2 L:HIS18 2.6 50.0 1.0
CE1 L:HIS18 2.9 50.0 1.0
SD L:MET80 3.0 50.0 1.0
C1B L:HEC500 3.0 50.0 1.0
C1D L:HEC500 3.0 50.0 1.0
C4C L:HEC500 3.0 50.0 1.0
C4B L:HEC500 3.0 50.0 1.0
C4A L:HEC500 3.1 50.0 1.0
C4D L:HEC500 3.1 50.0 1.0
C1A L:HEC500 3.1 50.0 1.0
C1C L:HEC500 3.1 50.0 1.0
CE L:MET80 3.4 50.0 1.0
CHD L:HEC500 3.4 50.0 1.0
CHB L:HEC500 3.4 50.0 1.0
CHA L:HEC500 3.4 50.0 1.0
CHC L:HEC500 3.4 50.0 1.0
CG L:MET80 3.5 50.0 1.0
CD2 L:HIS18 3.9 50.0 1.0
ND1 L:HIS18 4.2 50.0 1.0
C2B L:HEC500 4.2 50.0 1.0
C3B L:HEC500 4.2 50.0 1.0
C3A L:HEC500 4.3 50.0 1.0
C2A L:HEC500 4.3 50.0 1.0
C2D L:HEC500 4.3 50.0 1.0
C3C L:HEC500 4.3 50.0 1.0
C2C L:HEC500 4.3 50.0 1.0
C3D L:HEC500 4.3 50.0 1.0
CB L:MET80 4.3 50.0 1.0
CG L:HIS18 4.7 50.0 1.0

Iron binding site 6 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 6 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe500

b:50.0
occ:1.00
FE M:HEC500 0.0 50.0 1.0
ND M:HEC500 2.0 50.0 1.0
NC M:HEC500 2.0 50.0 1.0
NA M:HEC500 2.1 50.0 1.0
NB M:HEC500 2.1 50.0 1.0
NE2 M:HIS18 2.6 50.0 1.0
CE1 M:HIS18 2.9 50.0 1.0
SD M:MET80 3.0 50.0 1.0
C1B M:HEC500 3.0 50.0 1.0
C1D M:HEC500 3.0 50.0 1.0
C4C M:HEC500 3.0 50.0 1.0
C4B M:HEC500 3.0 50.0 1.0
C4A M:HEC500 3.1 50.0 1.0
C4D M:HEC500 3.1 50.0 1.0
C1A M:HEC500 3.1 50.0 1.0
C1C M:HEC500 3.1 50.0 1.0
CE M:MET80 3.4 50.0 1.0
CHD M:HEC500 3.4 50.0 1.0
CHB M:HEC500 3.4 50.0 1.0
CHA M:HEC500 3.4 50.0 1.0
CHC M:HEC500 3.4 50.0 1.0
CG M:MET80 3.5 50.0 1.0
CD2 M:HIS18 3.9 50.0 1.0
ND1 M:HIS18 4.2 50.0 1.0
C2B M:HEC500 4.2 50.0 1.0
C3B M:HEC500 4.2 50.0 1.0
C3A M:HEC500 4.3 50.0 1.0
C2A M:HEC500 4.3 50.0 1.0
C2D M:HEC500 4.3 50.0 1.0
C3C M:HEC500 4.3 50.0 1.0
C2C M:HEC500 4.3 50.0 1.0
C3D M:HEC500 4.3 50.0 1.0
CB M:MET80 4.3 50.0 1.0
CG M:HIS18 4.7 50.0 1.0

Iron binding site 7 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 7 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe500

b:50.0
occ:1.00
FE N:HEC500 0.0 50.0 1.0
ND N:HEC500 2.0 50.0 1.0
NC N:HEC500 2.0 50.0 1.0
NA N:HEC500 2.1 50.0 1.0
NB N:HEC500 2.1 50.0 1.0
NE2 N:HIS18 2.6 50.0 1.0
CE1 N:HIS18 2.9 50.0 1.0
SD N:MET80 3.0 50.0 1.0
C1B N:HEC500 3.0 50.0 1.0
C1D N:HEC500 3.0 50.0 1.0
C4C N:HEC500 3.0 50.0 1.0
C4B N:HEC500 3.0 50.0 1.0
C4A N:HEC500 3.1 50.0 1.0
C4D N:HEC500 3.1 50.0 1.0
C1A N:HEC500 3.1 50.0 1.0
C1C N:HEC500 3.1 50.0 1.0
CE N:MET80 3.4 50.0 1.0
CHD N:HEC500 3.4 50.0 1.0
CHB N:HEC500 3.4 50.0 1.0
CHA N:HEC500 3.4 50.0 1.0
CHC N:HEC500 3.4 50.0 1.0
CG N:MET80 3.5 50.0 1.0
CD2 N:HIS18 3.9 50.0 1.0
ND1 N:HIS18 4.2 50.0 1.0
C2B N:HEC500 4.2 50.0 1.0
C3B N:HEC500 4.2 50.0 1.0
C3A N:HEC500 4.3 50.0 1.0
C2A N:HEC500 4.3 50.0 1.0
C2D N:HEC500 4.3 50.0 1.0
C3C N:HEC500 4.3 50.0 1.0
C3D N:HEC500 4.3 50.0 1.0
C2C N:HEC500 4.3 50.0 1.0
CB N:MET80 4.3 50.0 1.0
CG N:HIS18 4.7 50.0 1.0

Reference:

T.C.Cheng, C.Hong, I.V.Akey, S.Yuan, C.W.Akey. A Near Atomic Structure of the Active Human Apoptosome. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27697150
DOI: 10.7554/ELIFE.17755
Page generated: Tue Aug 6 02:57:19 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy