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Iron in PDB 5kaf: Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
Enzymatic activity of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
All present enzymatic activity of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution:
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution, PDB code: 5kaf
was solved by
I.D.Young,
M.Ibrahim,
R.Chatterjee,
S.Gul,
S.Koroidov,
A.S.Brewster,
R.Tran,
R.Alonso-Mori,
F.Fuller,
T.Kroll,
T.Michels-Clark,
H.Laksmono,
R.G.Sierra,
C.A.Stan,
C.Saracini,
M.A.Bean,
I.Seuffert,
D.Sokaras,
T.-C.Weng,
M.S.Hunter,
A.Aquila,
J.E.Koglin,
J.Robinson,
M.Liang,
S.Boutet,
A.Y.Lyubimov,
M.Uervirojnangkoorn,
N.W.Moriarty,
D.Liebschner,
P.V.Afonine,
D.G.Waterman,
G.Evans,
H.Dobbek,
W.I.Weis,
A.T.Brunger,
P.H.Zwart,
P.D.Adams,
A.Zouni,
J.Messinger,
U.Bergmann,
N.K.Sauter,
J.Kern,
V.K.Yachandra,
J.Yano,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 43.12 / 3.00 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 117.731, 223.815, 330.818, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 26.4 / 30.3 |
Other elements in 5kaf:
The structure of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution also contains other interesting chemical elements:
| Magnesium | (Mg) | 70 atoms |
| Manganese | (Mn) | 8 atoms |
| Calcium | (Ca) | 2 atoms |
| Chlorine | (Cl) | 4 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
(pdb code 5kaf). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution, PDB code: 5kaf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution, PDB code: 5kaf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 5kaf
Go back to
Iron Binding Sites List in 5kaf
Iron binding site 1 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution within 5.0Å range:
|
Iron binding site 2 out of 6 in 5kaf
Go back to
Iron Binding Sites List in 5kaf
Iron binding site 2 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution within 5.0Å range:
|
Iron binding site 3 out of 6 in 5kaf
Go back to
Iron Binding Sites List in 5kaf
Iron binding site 3 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution within 5.0Å range:
|
Iron binding site 4 out of 6 in 5kaf
Go back to
Iron Binding Sites List in 5kaf
Iron binding site 4 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution within 5.0Å range:
|
Iron binding site 5 out of 6 in 5kaf
Go back to
Iron Binding Sites List in 5kaf
Iron binding site 5 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution within 5.0Å range:
|
Iron binding site 6 out of 6 in 5kaf
Go back to
Iron Binding Sites List in 5kaf
Iron binding site 6 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Rt Xfel Structure of Photosystem II in the Dark State at 3.0 A Resolution within 5.0Å range:
|
Reference:
I.D.Young,
M.Ibrahim,
R.Chatterjee,
S.Gul,
F.D.Fuller,
S.Koroidov,
A.S.Brewster,
R.Tran,
R.Alonso-Mori,
T.Kroll,
T.Michels-Clark,
H.Laksmono,
R.G.Sierra,
C.A.Stan,
R.Hussein,
M.Zhang,
L.Douthit,
M.Kubin,
C.De Lichtenberg,
L.Vo Pham,
H.Nilsson,
M.H.Cheah,
D.Shevela,
C.Saracini,
M.A.Bean,
I.Seuffert,
D.Sokaras,
T.C.Weng,
E.Pastor,
C.Weninger,
T.Fransson,
L.Lassalle,
P.Brauer,
P.Aller,
P.T.Docker,
B.Andi,
A.M.Orville,
J.M.Glownia,
S.Nelson,
M.Sikorski,
D.Zhu,
M.S.Hunter,
T.J.Lane,
A.Aquila,
J.E.Koglin,
J.Robinson,
M.Liang,
S.Boutet,
A.Y.Lyubimov,
M.Uervirojnangkoorn,
N.W.Moriarty,
D.Liebschner,
P.V.Afonine,
D.G.Waterman,
G.Evans,
P.Wernet,
H.Dobbek,
W.I.Weis,
A.T.Brunger,
P.H.Zwart,
P.D.Adams,
A.Zouni,
J.Messinger,
U.Bergmann,
N.K.Sauter,
J.Kern,
V.K.Yachandra,
J.Yano.
Structure of Photosystem II and Substrate Binding at Room Temperature. Nature V. 540 453 2016.
ISSN: ESSN 1476-4687
PubMed: 27871088
DOI: 10.1038/NATURE20161
Page generated: Tue Aug 5 22:32:27 2025
ISSN: ESSN 1476-4687
PubMed: 27871088
DOI: 10.1038/NATURE20161
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