Iron in PDB 5o1m: Structure of Latex Clearing Protein Lcp in the Closed State

The structure of Structure of Latex Clearing Protein Lcp in the Closed State, PDB code: 5o1m was solved by L.Ilcu, W.Roether, J.Birke, A.Brausemann, O.Einsle, D.Jendrossek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.45 / 2.20
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	54.863, 56.544, 63.861, 74.25, 86.07, 71.04
R / Rfree (%)	17.5 / 22.3

The binding sites of Iron atom in the Structure of Latex Clearing Protein Lcp in the Closed State (pdb code 5o1m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Latex Clearing Protein Lcp in the Closed State, PDB code: 5o1m:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Structure of Latex Clearing Protein Lcp in the Closed State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Latex Clearing Protein Lcp in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:24.2 occ:1.00 FE A:HEM600 0.0 24.2 1.0 NB A:HEM600 2.0 22.9 1.0 NC A:HEM600 2.0 22.4 1.0 NA A:HEM600 2.0 23.2 1.0 ND A:HEM600 2.1 22.9 1.0 NE2 A:HIS198 2.1 27.6 1.0 NZ A:LYS167 2.4 35.3 1.0 C1B A:HEM600 2.9 23.4 1.0 C4B A:HEM600 2.9 23.7 1.0 C4C A:HEM600 3.0 21.2 1.0 C1D A:HEM600 3.0 22.5 1.0 C4A A:HEM600 3.0 24.3 1.0 C1C A:HEM600 3.0 21.6 1.0 C1A A:HEM600 3.0 24.7 1.0 C4D A:HEM600 3.1 22.6 1.0 CE1 A:HIS198 3.1 27.7 1.0 CD2 A:HIS198 3.1 28.6 1.0 CHB A:HEM600 3.3 24.9 1.0 CHC A:HEM600 3.3 21.8 1.0 CHD A:HEM600 3.4 22.0 1.0 CE A:LYS167 3.4 37.1 1.0 CHA A:HEM600 3.5 23.9 1.0 CD A:LYS167 4.1 37.2 1.0 C2B A:HEM600 4.2 23.6 1.0 C3A A:HEM600 4.2 25.7 1.0 C2A A:HEM600 4.2 26.5 1.0 C3B A:HEM600 4.2 23.8 1.0 C3C A:HEM600 4.2 20.3 1.0 ND1 A:HIS198 4.2 27.9 1.0 C2C A:HEM600 4.2 20.9 1.0 CG A:HIS198 4.3 28.2 1.0 C2D A:HEM600 4.3 21.7 1.0 C3D A:HEM600 4.3 21.7 1.0 CG A:LYS167 4.8 35.7 1.0

Iron binding site 2 out of 2 in the Structure of Latex Clearing Protein Lcp in the Closed State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Latex Clearing Protein Lcp in the Closed State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:20.1 occ:1.00 FE B:HEM501 0.0 20.1 1.0 NC B:HEM501 1.6 20.6 1.0 NA B:HEM501 1.8 19.5 1.0 ND B:HEM501 2.1 19.2 1.0 NE2 B:HIS198 2.1 25.7 1.0 NB B:HEM501 2.2 21.4 1.0 NZ B:LYS167 2.5 33.8 1.0 C4C B:HEM501 2.7 20.8 1.0 C1C B:HEM501 2.8 21.9 1.0 C1A B:HEM501 2.9 20.5 1.0 C4A B:HEM501 2.9 21.0 1.0 C1D B:HEM501 3.0 19.6 1.0 C4D B:HEM501 3.0 20.1 1.0 C1B B:HEM501 3.1 21.9 1.0 C4B B:HEM501 3.1 22.9 1.0 CE1 B:HIS198 3.1 26.8 1.0 CD2 B:HIS198 3.1 26.5 1.0 CHD B:HEM501 3.2 19.5 1.0 CHC B:HEM501 3.3 21.9 1.0 CHA B:HEM501 3.3 19.8 1.0 CHB B:HEM501 3.4 21.9 1.0 CE B:LYS167 3.6 32.7 1.0 C3C B:HEM501 3.8 21.3 1.0 C2C B:HEM501 3.9 22.3 1.0 CD B:LYS167 4.0 33.1 1.0 C2A B:HEM501 4.0 24.1 1.0 C3A B:HEM501 4.0 22.1 1.0 C2D B:HEM501 4.2 20.1 1.0 ND1 B:HIS198 4.2 24.8 1.0 C3D B:HEM501 4.3 20.7 1.0 CG B:HIS198 4.3 25.5 1.0 C2B B:HEM501 4.3 23.0 1.0 C3B B:HEM501 4.3 22.1 1.0 CG B:LYS167 4.8 30.1 1.0

L.Ilcu, W.Rother, J.Birke, A.Brausemann, O.Einsle, D.Jendrossek. Structural and Functional Analysis of Latex Clearing Protein (Lcp) Provides Insight Into the Enzymatic Cleavage of Rubber. Sci Rep V. 7 6179 2017.
ISSN: ESSN 2045-2322
PubMed: 28733658
DOI: 10.1038/S41598-017-05268-2