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Iron in PDB 5o41: Low-Dose Fixed Target Serial Synchrotron Crystallography Structure of Sperm Whale Myoglobin

Protein crystallography data

The structure of Low-Dose Fixed Target Serial Synchrotron Crystallography Structure of Sperm Whale Myoglobin, PDB code: 5o41 was solved by R.L.Owen, D.Axford, D.Sherrell, H.Mueller-Werkmeister, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.33 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.873, 46.876, 84.665, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 25.3

Iron Binding Sites:

The binding sites of Iron atom in the Low-Dose Fixed Target Serial Synchrotron Crystallography Structure of Sperm Whale Myoglobin (pdb code 5o41). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Low-Dose Fixed Target Serial Synchrotron Crystallography Structure of Sperm Whale Myoglobin, PDB code: 5o41:

Iron binding site 1 out of 1 in 5o41

Go back to Iron Binding Sites List in 5o41
Iron binding site 1 out of 1 in the Low-Dose Fixed Target Serial Synchrotron Crystallography Structure of Sperm Whale Myoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Low-Dose Fixed Target Serial Synchrotron Crystallography Structure of Sperm Whale Myoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:5.8
occ:1.00
FE A:HEM201 0.0 5.8 1.0
C A:CMO203 1.9 6.9 1.0
NC A:HEM201 2.0 2.9 1.0
ND A:HEM201 2.0 9.3 1.0
NA A:HEM201 2.1 5.2 1.0
NB A:HEM201 2.1 9.5 1.0
NE2 A:HIS94 2.1 6.2 1.0
O A:CMO203 2.9 8.9 1.0
C4C A:HEM201 3.0 3.4 1.0
C1D A:HEM201 3.0 7.2 1.0
C4D A:HEM201 3.0 9.3 1.0
C1A A:HEM201 3.0 7.5 1.0
CD2 A:HIS94 3.1 8.8 1.0
C1C A:HEM201 3.1 5.3 1.0
CE1 A:HIS94 3.1 10.5 1.0
C4A A:HEM201 3.1 8.2 1.0
C4B A:HEM201 3.1 8.3 1.0
C1B A:HEM201 3.1 7.3 1.0
CHD A:HEM201 3.4 8.0 1.0
CHA A:HEM201 3.4 9.1 1.0
CHC A:HEM201 3.6 5.5 1.0
CHB A:HEM201 3.6 7.3 1.0
ND1 A:HIS94 4.2 7.7 1.0
C2D A:HEM201 4.2 10.6 1.0
C3C A:HEM201 4.2 1.9 1.0
CG A:HIS94 4.2 8.5 1.0
C2C A:HEM201 4.2 6.4 1.0
C3D A:HEM201 4.3 6.7 1.0
C2A A:HEM201 4.3 7.3 1.0
C3A A:HEM201 4.3 4.2 1.0
C3B A:HEM201 4.3 12.6 1.0
C2B A:HEM201 4.3 9.8 1.0
CG2 A:VAL69 4.7 7.8 1.0
NE2 A:HIS65 4.8 10.8 1.0
CD2 A:HIS98 5.0 10.8 1.0

Reference:

R.L.Owen, D.Axford, D.A.Sherrell, A.Kuo, O.P.Ernst, E.C.Schulz, R.J.Miller, H.M.Mueller-Werkmeister. Low-Dose Fixed-Target Serial Synchrotron Crystallography. Acta Crystallogr D Struct V. 73 373 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28375148
DOI: 10.1107/S2059798317002996
Page generated: Wed Aug 6 00:13:01 2025

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