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Iron in PDB 5oj9: Structure of Mb Nmh

Protein crystallography data

The structure of Structure of Mb Nmh, PDB code: 5oj9 was solved by T.Hayashi, M.Pott, T.Mori, P.Mittl, A.Green, D.Hivert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.67 / 1.48
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.712, 47.786, 77.484, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 23.2

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Mb Nmh (pdb code 5oj9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of Mb Nmh, PDB code: 5oj9:

Iron binding site 1 out of 1 in 5oj9

Go back to Iron Binding Sites List in 5oj9
Iron binding site 1 out of 1 in the Structure of Mb Nmh


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Mb Nmh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:15.4
occ:1.00
FE A:HEM201 0.0 15.4 1.0
NC A:HEM201 2.0 16.1 1.0
ND A:HEM201 2.0 19.4 1.0
NB A:HEM201 2.0 14.1 1.0
NA A:HEM201 2.0 16.1 1.0
NE2 A:MHS93 2.2 13.4 1.0
O A:HOH309 2.2 25.3 1.0
C1C A:HEM201 3.0 13.8 1.0
C4B A:HEM201 3.0 14.4 1.0
C4D A:HEM201 3.0 19.8 1.0
CE1 A:MHS93 3.1 15.7 1.0
C4C A:HEM201 3.1 16.6 1.0
C1D A:HEM201 3.1 17.6 1.0
C1A A:HEM201 3.1 18.4 1.0
C4A A:HEM201 3.1 15.5 1.0
C1B A:HEM201 3.1 12.2 1.0
CD2 A:MHS93 3.2 17.6 1.0
CHC A:HEM201 3.4 13.1 1.0
CHA A:HEM201 3.4 20.7 1.0
CHD A:HEM201 3.4 17.7 1.0
CHB A:HEM201 3.5 12.6 1.0
C3D A:HEM201 4.3 24.4 1.0
C2C A:HEM201 4.3 15.5 1.0
C3C A:HEM201 4.3 14.3 1.0
C2D A:HEM201 4.3 22.9 1.0
C3B A:HEM201 4.3 14.7 1.0
ND1 A:MHS93 4.3 16.9 1.0
C2B A:HEM201 4.3 12.3 1.0
C3A A:HEM201 4.3 16.2 1.0
C2A A:HEM201 4.3 19.6 1.0
NE2 A:HIS64 4.3 18.8 1.0
CG A:MHS93 4.4 17.7 1.0
CG2 A:VAL68 4.7 17.9 1.0
CE1 A:HIS64 4.8 19.0 1.0

Reference:

M.Pott, T.Hayashi, T.Mori, P.R.E.Mittl, A.P.Green, D.Hilvert. A Noncanonical Proximal Heme Ligand Affords An Efficient Peroxidase in A Globin Fold. J. Am. Chem. Soc. V. 140 1535 2018.
ISSN: ESSN 1520-5126
PubMed: 29309143
DOI: 10.1021/JACS.7B12621
Page generated: Tue Aug 6 07:12:04 2024

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