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Iron in PDB 5oms: Crystal Structure of Amycolatopsis Cytochrome P450 Gcoa in Complex with Guaethol.

Protein crystallography data

The structure of Crystal Structure of Amycolatopsis Cytochrome P450 Gcoa in Complex with Guaethol., PDB code: 5oms was solved by S.J.B.Mallinson, C.W.Johnson, E.L.Neidle, G.T.Beckham, J.E.Mcgeehan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.46 / 1.95
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.280, 104.280, 114.620, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.5

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Amycolatopsis Cytochrome P450 Gcoa in Complex with Guaethol. (pdb code 5oms). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Amycolatopsis Cytochrome P450 Gcoa in Complex with Guaethol., PDB code: 5oms:

Iron binding site 1 out of 1 in 5oms

Go back to Iron Binding Sites List in 5oms
Iron binding site 1 out of 1 in the Crystal Structure of Amycolatopsis Cytochrome P450 Gcoa in Complex with Guaethol.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Amycolatopsis Cytochrome P450 Gcoa in Complex with Guaethol. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:29.2
occ:1.00
FE A:HEM501 0.0 29.2 1.0
NB A:HEM501 1.8 30.3 1.0
ND A:HEM501 1.8 30.4 1.0
NA A:HEM501 1.9 28.2 1.0
NC A:HEM501 1.9 30.9 1.0
SG A:CYS356 2.4 32.0 1.0
C4B A:HEM501 3.0 28.5 1.0
C4A A:HEM501 3.0 25.4 1.0
C1D A:HEM501 3.0 29.2 1.0
C1C A:HEM501 3.0 26.6 1.0
C4C A:HEM501 3.0 28.4 1.0
C1A A:HEM501 3.1 25.1 1.0
C1B A:HEM501 3.1 28.3 1.0
C4D A:HEM501 3.1 27.6 1.0
CB A:CYS356 3.3 28.6 1.0
CHD A:HEM501 3.8 28.9 1.0
CHB A:HEM501 3.8 27.4 1.0
CHC A:HEM501 3.8 27.7 1.0
CHA A:HEM501 3.9 28.7 1.0
CA A:CYS356 3.9 30.0 1.0
CAG A:261502 4.2 36.2 1.0
C3A A:HEM501 4.3 29.5 1.0
C2C A:HEM501 4.3 30.2 1.0
C3C A:HEM501 4.3 26.8 1.0
C3B A:HEM501 4.3 29.1 1.0
C2A A:HEM501 4.3 26.4 1.0
CAA A:261502 4.3 38.3 1.0
C2D A:HEM501 4.4 31.1 1.0
C2B A:HEM501 4.4 28.4 1.0
C3D A:HEM501 4.4 30.0 1.0
N A:ALA357 4.6 28.8 1.0
N A:GLY358 4.6 29.3 1.0
C A:CYS356 4.7 33.3 1.0

Reference:

S.J.B.Mallinson, M.M.Machovina, R.L.Silveira, M.Garcia-Borras, N.Gallup, C.W.Johnson, M.D.Allen, M.S.Skaf, M.F.Crowley, E.L.Neidle, K.N.Houk, G.T.Beckham, J.L.Dubois, J.E.Mcgeehan. A Promiscuous Cytochrome P450 Aromatic O-Demethylase For Lignin Bioconversion. Nat Commun V. 9 2487 2018.
ISSN: ESSN 2041-1723
PubMed: 29950589
DOI: 10.1038/S41467-018-04878-2
Page generated: Wed Aug 6 01:16:35 2025

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