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Iron in PDB 5t8z: Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin

Enzymatic activity of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin

All present enzymatic activity of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin:
3.5.1.88;

Protein crystallography data

The structure of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin, PDB code: 5t8z was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.02 / 1.85
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 39.120, 70.540, 140.510, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 20.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin (pdb code 5t8z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin, PDB code: 5t8z:

Iron binding site 1 out of 1 in 5t8z

Go back to Iron Binding Sites List in 5t8z
Iron binding site 1 out of 1 in the Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:33.7
occ:1.00
 NE2 A:HIS141 2.3 29.6 1.0
NE2 A:HIS145 2.3 35.2 1.0
O2 A:BB2200 2.4 34.3 1.0
SG A:CYS99 2.4 32.6 1.0
O4 A:BB2200 2.4 55.5 1.0
C3 A:BB2200 2.9 55.2 1.0
N1 A:BB2200 3.0 43.6 1.0
CD2 A:HIS141 3.1 27.9 1.0
CD2 A:HIS145 3.2 30.7 1.0
CE1 A:HIS141 3.3 29.3 1.0
CE1 A:HIS145 3.4 38.2 1.0
NE2 A:GLN51 3.4 34.8 1.0
CB A:CYS99 3.5 30.3 1.0
O A:HOH351 3.7 27.5 1.0
CA A:CYS99 3.8 34.4 1.0
CD A:GLN51 4.0 36.3 1.0
OE1 A:GLN51 4.2 37.1 1.0
N A:LEU100 4.3 32.1 1.0
CG A:HIS141 4.3 29.3 1.0
C5 A:BB2200 4.3 46.4 1.0
ND1 A:HIS141 4.4 28.7 1.0
CG A:HIS145 4.4 33.4 1.0
ND1 A:HIS145 4.4 35.7 1.0
O A:HOH374 4.5 24.7 1.0
C A:CYS99 4.5 38.4 1.0
OE1 A:GLU142 4.7 36.8 1.0
C6 A:BB2200 4.7 45.5 1.0
OE2 A:GLU142 4.7 38.9 1.0
O A:GLY98 4.8 38.3 1.0

Reference:

R.M.Irwin, J.Abendroth, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Peptide Deformylase From Burkholderia Multivorans in Complex with Actinonin To Be Published.
Page generated: Wed Aug 6 01:29:47 2025

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