Atomistry » Iron » PDB 5tis-5ufj » 5twt
Atomistry »
  Iron »
    PDB 5tis-5ufj »
      5twt »

Iron in PDB 5twt: Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum)

Enzymatic activity of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum)

All present enzymatic activity of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum):
1.11.1.7;

Protein crystallography data

The structure of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum), PDB code: 5twt was solved by T.W.Moural, C.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.55 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.854, 59.432, 96.874, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 14.5

Other elements in 5twt:

The structure of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum) also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum) (pdb code 5twt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum), PDB code: 5twt:

Iron binding site 1 out of 1 in 5twt

Go back to Iron Binding Sites List in 5twt
Iron binding site 1 out of 1 in the Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:8.4
occ:1.00
 FE A:HEM301 0.0 8.4 1.0
ND A:HEM301 2.0 8.3 1.0
NB A:HEM301 2.0 10.5 1.0
NA A:HEM301 2.0 9.0 1.0
NC A:HEM301 2.0 9.4 1.0
NE2 A:HIS167 2.1 9.2 1.0
O A:HOH561 2.9 18.8 1.0
C1D A:HEM301 3.0 8.0 1.0
C1B A:HEM301 3.0 10.8 1.0
C4B A:HEM301 3.0 10.4 1.0
C1C A:HEM301 3.0 9.6 1.0
C4C A:HEM301 3.0 8.8 1.0
C4A A:HEM301 3.0 9.9 1.0
C4D A:HEM301 3.0 8.0 1.0
CE1 A:HIS167 3.1 9.6 1.0
C1A A:HEM301 3.1 9.1 1.0
CD2 A:HIS167 3.1 8.8 1.0
HE1 A:HIS167 3.2 11.5 1.0
HD2 A:HIS167 3.3 10.5 1.0
CHD A:HEM301 3.4 8.0 1.0
CHC A:HEM301 3.4 10.2 1.0
CHB A:HEM301 3.4 10.9 1.0
CHA A:HEM301 3.4 8.0 1.0
HE A:ARG38 3.9 13.9 1.0
HE2 A:PHE41 4.1 12.9 1.0
ND1 A:HIS167 4.2 8.8 1.0
C2D A:HEM301 4.2 8.8 1.0
C3D A:HEM301 4.2 8.7 1.0
C2B A:HEM301 4.2 11.4 1.0
C3B A:HEM301 4.2 11.6 1.0
C2C A:HEM301 4.2 10.4 1.0
C3C A:HEM301 4.3 9.9 1.0
C3A A:HEM301 4.3 10.6 1.0
HG3 A:ARG38 4.3 11.6 1.0
CG A:HIS167 4.3 7.7 1.0
C2A A:HEM301 4.3 9.7 1.0
HD2 A:ARG38 4.3 12.4 1.0
HHD A:HEM301 4.4 9.6 1.0
HHB A:HEM301 4.4 13.1 1.0
HHC A:HEM301 4.4 12.2 1.0
HHA A:HEM301 4.4 9.6 1.0
HD2 A:PHE41 4.5 12.6 1.0
NE A:ARG38 4.5 11.6 1.0
CE2 A:PHE41 4.8 10.7 1.0
CD A:ARG38 4.8 10.3 1.0
HD11 A:LEU233 4.9 12.8 1.0
HD1 A:HIS167 5.0 10.6 1.0
HD13 A:LEU210 5.0 13.1 1.0

Reference:

T.W.Moural, K.M.Lewis, C.Barnaba, F.Zhu, N.A.Palmer, G.Sarath, E.D.Scully, J.P.Jones, S.E.Sattler, C.Kang. Characterization of Class III Peroxidases From Switchgrass. Plant Physiol. V. 173 417 2017.
ISSN: ESSN 1532-2548
PubMed: 27879392
DOI: 10.1104/PP.16.01426
Page generated: Tue Aug 6 09:42:08 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy