Atomistry » Iron » PDB 5tis-5ufj » 5ty3
Atomistry »
  Iron »
    PDB 5tis-5ufj »
      5ty3 »

Iron in PDB 5ty3: Crystal Structure of K72A Variant of Human Cytochrome C

Protein crystallography data

The structure of Crystal Structure of K72A Variant of Human Cytochrome C, PDB code: 5ty3 was solved by T.C.Mou, S.M.Nold, H.Lei, S.R.Sprang, B.E.Bowler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.83 / 1.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.794, 37.902, 60.254, 90.00, 116.79, 90.00
R / Rfree (%) 14.7 / 16.6

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of K72A Variant of Human Cytochrome C (pdb code 5ty3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of K72A Variant of Human Cytochrome C, PDB code: 5ty3:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5ty3

Go back to Iron Binding Sites List in 5ty3
Iron binding site 1 out of 2 in the Crystal Structure of K72A Variant of Human Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of K72A Variant of Human Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:7.3
occ:1.00
FE A:HEC201 0.0 7.3 1.0
ND A:HEC201 2.0 7.6 1.0
NE2 A:HIS18 2.0 8.0 1.0
NA A:HEC201 2.0 7.2 1.0
NC A:HEC201 2.0 7.7 1.0
NB A:HEC201 2.0 7.5 1.0
SD A:MET80 2.3 7.5 1.0
CE1 A:HIS18 2.9 8.3 1.0
C1D A:HEC201 3.0 7.3 1.0
C1A A:HEC201 3.0 7.8 1.0
C4C A:HEC201 3.0 7.2 1.0
C4A A:HEC201 3.0 7.8 1.0
C1B A:HEC201 3.0 7.2 1.0
CD2 A:HIS18 3.0 8.2 1.0
C4D A:HEC201 3.0 7.5 1.0
C1C A:HEC201 3.0 7.1 1.0
C4B A:HEC201 3.0 7.8 1.0
HE1 A:HIS18 3.1 9.9 1.0
HG3 A:MET80 3.2 8.8 1.0
HD2 A:HIS18 3.2 9.9 1.0
CE A:MET80 3.3 9.4 1.0
CHD A:HEC201 3.4 7.2 1.0
CHB A:HEC201 3.4 7.7 1.0
CHA A:HEC201 3.4 8.1 1.0
CG A:MET80 3.4 7.3 1.0
HE3 A:MET80 3.4 11.3 1.0
CHC A:HEC201 3.4 7.8 1.0
HE1 A:MET80 3.5 11.3 1.0
HB2 A:MET80 3.8 8.9 1.0
ND1 A:HIS18 4.1 8.1 1.0
HH A:TYR67 4.1 12.8 1.0
HG2 A:MET80 4.1 8.8 1.0
CG A:HIS18 4.2 8.0 1.0
CB A:MET80 4.2 7.5 1.0
HE2 A:MET80 4.2 11.3 1.0
C2B A:HEC201 4.2 7.3 1.0
C3C A:HEC201 4.2 7.4 1.0
C2A A:HEC201 4.2 8.3 1.0
C2D A:HEC201 4.2 8.0 1.0
C2C A:HEC201 4.3 8.3 1.0
C3B A:HEC201 4.3 8.2 1.0
C3A A:HEC201 4.3 7.5 1.0
C3D A:HEC201 4.3 7.5 1.0
HHD A:HEC201 4.4 8.7 1.0
HHB A:HEC201 4.4 9.2 1.0
HHA A:HEC201 4.4 9.7 1.0
HHC A:HEC201 4.4 9.4 1.0
HA3 A:GLY29 4.6 10.3 1.0
HE2 A:TYR67 4.7 11.3 1.0
HD2 A:PRO30 4.7 10.8 1.0
HB2 A:CYS17 4.7 11.3 1.0
HB3 A:MET80 4.8 8.9 1.0
HD1 A:HIS18 4.9 9.7 1.0
OH A:TYR67 4.9 10.6 1.0
HD21 A:LEU32 4.9 13.2 1.0

Iron binding site 2 out of 2 in 5ty3

Go back to Iron Binding Sites List in 5ty3
Iron binding site 2 out of 2 in the Crystal Structure of K72A Variant of Human Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of K72A Variant of Human Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:7.1
occ:1.00
FE B:HEC201 0.0 7.1 1.0
NA B:HEC201 2.0 7.1 1.0
NE2 B:HIS18 2.0 7.9 1.0
NC B:HEC201 2.0 6.9 1.0
NB B:HEC201 2.0 7.2 1.0
ND B:HEC201 2.0 6.8 1.0
SD B:MET80 2.3 7.2 1.0
CE1 B:HIS18 2.9 8.3 1.0
C1B B:HEC201 3.0 7.5 1.0
C4A B:HEC201 3.0 7.4 1.0
C1D B:HEC201 3.0 6.5 1.0
C4C B:HEC201 3.0 7.1 1.0
C4B B:HEC201 3.0 7.2 1.0
C1A B:HEC201 3.0 7.5 1.0
C4D B:HEC201 3.0 6.5 1.0
C1C B:HEC201 3.0 7.5 1.0
CD2 B:HIS18 3.0 8.2 1.0
HE1 B:HIS18 3.1 9.9 1.0
HD2 B:HIS18 3.3 9.8 1.0
HG3 B:MET80 3.3 9.0 1.0
CE B:MET80 3.3 8.5 1.0
CHB B:HEC201 3.4 7.1 1.0
CHA B:HEC201 3.4 7.0 1.0
CHD B:HEC201 3.4 6.9 1.0
CHC B:HEC201 3.4 8.0 1.0
HE3 B:MET80 3.4 10.2 1.0
CG B:MET80 3.4 7.5 1.0
HE1 B:MET80 3.4 10.2 1.0
HB2 B:MET80 3.8 8.9 1.0
HH B:TYR67 4.1 12.4 1.0
ND1 B:HIS18 4.1 8.2 1.0
CG B:HIS18 4.2 7.4 1.0
HG2 B:MET80 4.2 9.0 1.0
HE2 B:MET80 4.2 10.2 1.0
CB B:MET80 4.2 7.4 1.0
C3C B:HEC201 4.2 7.3 1.0
C2D B:HEC201 4.2 8.2 1.0
C3B B:HEC201 4.3 8.1 1.0
C2A B:HEC201 4.3 7.9 1.0
C3D B:HEC201 4.3 7.2 1.0
C2B B:HEC201 4.3 7.5 1.0
C3A B:HEC201 4.3 7.9 1.0
C2C B:HEC201 4.3 7.3 1.0
HHB B:HEC201 4.4 8.5 1.0
HHA B:HEC201 4.4 8.3 1.0
HHD B:HEC201 4.4 8.3 1.0
HHC B:HEC201 4.4 9.5 1.0
HA3 B:GLY29 4.6 10.7 1.0
HD2 B:PRO30 4.6 11.3 1.0
HE2 B:TYR67 4.6 10.4 1.0
HB2 B:CYS17 4.8 11.7 1.0
HB3 B:MET80 4.8 8.9 1.0
HD1 B:HIS18 4.9 9.9 1.0
OH B:TYR67 4.9 10.3 1.0
HD21 B:LEU32 5.0 12.6 1.0

Reference:

S.M.Nold, H.Lei, T.C.Mou, B.E.Bowler. Effect of A K72A Mutation on the Structure, Stability, Dynamics, and Peroxidase Activity of Human Cytochrome C. Biochemistry V. 56 3358 2017.
ISSN: ISSN 1520-4995
PubMed: 28598148
DOI: 10.1021/ACS.BIOCHEM.7B00342
Page generated: Wed Aug 6 01:48:13 2025

Last articles

Ni in 9IYR
Ni in 9IYO
Ni in 9IYN
Ni in 9IYM
Ni in 9IYL
Ni in 9GOF
Ni in 9HI3
Ni in 9H1L
Ni in 9GP1
Ni in 9GNR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy