Iron in PDB 5udv: Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron

The structure of Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron, PDB code: 5udv was solved by M.Fellner, B.Desguin, R.P.Hausinger, J.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.58 / 2.62
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	107.546, 107.546, 318.289, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 25.9

The binding sites of Iron atom in the Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron (pdb code 5udv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron, PDB code: 5udv:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:74.5 occ:1.00 O C:HOH408 1.9 82.9 1.0 OD1 C:ASP231 2.1 62.9 1.0 OD1 A:ASP231 2.1 71.7 1.0 OD2 B:ASP231 2.3 71.2 1.0 OD1 B:ASP231 2.4 67.4 1.0 OD2 A:ASP231 2.6 71.7 1.0 CG A:ASP231 2.6 70.9 1.0 CG B:ASP231 2.6 67.8 1.0 OD2 C:ASP231 2.7 62.5 1.0 CG C:ASP231 2.7 61.9 1.0 O A:HOH401 3.7 59.6 1.0 CB A:ASP231 4.0 69.2 1.0 CB B:ASP231 4.1 65.8 1.0 CB C:ASP231 4.2 60.0 1.0 O B:ALA227 4.7 60.5 1.0 O C:ALA227 4.8 58.8 1.0 CA C:ASP231 4.9 60.1 1.0 N C:ASP231 4.9 61.6 1.0 O A:ALA227 5.0 54.2 1.0

Iron binding site 2 out of 2 in the Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Lare, A Sulfur Transferase Involved in Synthesis of the Cofactor For Lactate Racemase, in Complex with Iron within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:74.4 occ:1.00 O F:HOH401 2.1 77.0 1.0 OD1 D:ASP231 2.3 76.7 1.0 OD2 D:ASP231 2.3 78.4 1.0 OD1 F:ASP231 2.3 66.4 1.0 OD2 E:ASP231 2.3 69.2 1.0 CG D:ASP231 2.6 76.3 1.0 OD2 F:ASP231 2.6 67.3 1.0 OD1 E:ASP231 2.7 70.2 1.0 CG F:ASP231 2.8 65.9 1.0 CG E:ASP231 2.8 68.9 1.0 CB D:ASP231 4.0 73.3 1.0 CB E:ASP231 4.3 67.3 1.0 CB F:ASP231 4.3 64.5 1.0 O D:ALA227 4.6 54.4 1.0 CA D:ASP231 5.0 70.0 1.0

M.Fellner, B.Desguin, R.P.Hausinger, J.Hu. Structural Insights Into the Catalytic Mechanism of A Sacrificial Sulfur Insertase of the N-Type Atp Pyrophosphatase Family, Lare. Proc. Natl. Acad. Sci. V. 114 9074 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28784764
DOI: 10.1073/PNAS.1704967114