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Iron in PDB 5v27: 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans

Enzymatic activity of 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans

All present enzymatic activity of 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans:
1.13.11.6;

Protein crystallography data

The structure of 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans, PDB code: 5v27 was solved by K.Dornevil, F.Liu, A.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.97 / 2.35
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 58.032, 58.032, 231.868, 90.00, 90.00, 120.00
R / Rfree (%) 20.9 / 27.4

Iron Binding Sites:

The binding sites of Iron atom in the 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans (pdb code 5v27). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans, PDB code: 5v27:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5v27

Go back to Iron Binding Sites List in 5v27
Iron binding site 1 out of 2 in the 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:49.4
occ:1.00
ND1 A:HIS51 2.1 51.6 1.0
O A:HOH315 2.1 46.8 1.0
NE2 A:HIS95 2.2 43.2 1.0
OE2 A:GLU57 2.2 51.7 1.0
O A:HOH310 2.3 40.4 1.0
OE1 A:GLU57 2.5 51.8 1.0
CD A:GLU57 2.7 51.7 1.0
CE1 A:HIS51 2.9 50.5 1.0
CD2 A:HIS95 3.0 42.7 1.0
CE1 A:HIS95 3.2 44.3 1.0
CG A:HIS51 3.2 49.1 1.0
CB A:HIS51 3.7 46.8 1.0
NE2 A:HIS51 4.1 53.0 1.0
CG A:GLU57 4.2 50.3 1.0
OE1 A:GLU110 4.2 50.1 1.0
CG A:HIS95 4.2 40.9 1.0
CD2 A:HIS51 4.3 49.0 1.0
ND1 A:HIS95 4.3 40.6 1.0
OD2 A:ASP53 4.4 48.0 1.0
CB A:ASP53 4.8 47.2 1.0
CD A:GLU110 5.0 52.7 1.0

Iron binding site 2 out of 2 in 5v27

Go back to Iron Binding Sites List in 5v27
Iron binding site 2 out of 2 in the 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:62.4
occ:1.00
SG A:CYS128 2.1 64.4 1.0
SG A:CYS125 2.3 67.5 1.0
SG A:CYS162 2.4 60.1 1.0
SG A:CYS165 2.5 71.6 1.0
CB A:CYS162 3.0 57.2 1.0
CB A:CYS125 3.0 65.0 1.0
CB A:CYS128 3.4 70.8 1.0
CB A:CYS165 3.5 68.3 1.0
N A:CYS128 3.6 68.0 1.0
N A:CYS165 3.9 69.7 1.0
CA A:CYS128 4.0 69.3 1.0
CA A:CYS165 4.3 67.9 1.0
CB A:ALA127 4.4 62.5 1.0
CA A:CYS162 4.5 63.1 1.0
CA A:CYS125 4.5 63.7 1.0
CB A:HIS130 4.6 67.7 1.0
C A:CYS128 4.6 70.3 1.0
CB A:GLN167 4.7 60.9 1.0
C A:ALA127 4.7 68.2 1.0
O A:HOH312 4.8 62.6 1.0
N A:GLY129 4.8 68.7 1.0
C A:HIS164 4.8 69.8 1.0
CB A:HIS164 4.8 69.7 1.0
N A:HIS130 4.9 68.1 1.0
N A:GLY166 4.9 68.5 1.0
CA A:ALA127 4.9 71.9 1.0
C A:CYS165 5.0 70.0 1.0
N A:GLN167 5.0 66.8 1.0
N A:ALA127 5.0 69.2 1.0

Reference:

K.Dornevil, F.Liu, A.Liu. 2.35 Angstrom Crystal Structure of P97V 3-Hydroxyanthranilate-3,4-Dioxygenase From Cupriavidus Metallidurans To Be Published.
Page generated: Tue Aug 6 10:05:53 2024

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