Iron in PDB 5v4t: Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form)

The structure of Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form), PDB code: 5v4t was solved by D.K.Wilson, W.S.Mak, J.B.Siegel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.12 / 1.70
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.466, 114.360, 64.857, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 22

The binding sites of Iron atom in the Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form) (pdb code 5v4t). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form), PDB code: 5v4t:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:13.0 occ:0.60 OE2 A:GLU111 1.9 23.2 1.0 OE2 A:GLU57 2.0 26.2 1.0 O A:HOH451 2.1 27.8 1.0 OE2 A:GLU145 2.2 26.1 1.0 OE1 A:GLU145 2.2 24.6 1.0 ND1 A:HIS148 2.2 15.6 1.0 CD A:GLU145 2.5 24.2 1.0 CD A:GLU111 3.0 22.2 1.0 CD A:GLU57 3.0 21.3 1.0 CE1 A:HIS148 3.0 14.3 1.0 CG A:HIS148 3.3 13.2 1.0 OE1 A:GLU57 3.4 27.8 1.0 CG A:GLU111 3.6 19.7 1.0 CB A:HIS148 3.8 13.0 1.0 OE1 A:GLU111 4.0 25.1 1.0 CG A:GLU145 4.0 19.8 1.0 NE2 A:GLN53 4.0 22.1 1.0 O A:HOH406 4.2 30.4 1.0 NE2 A:HIS148 4.2 13.9 1.0 CE2 A:PHE106 4.4 17.1 1.0 CG A:GLU57 4.4 16.9 1.0 CD2 A:HIS148 4.4 14.3 1.0 CZ A:PHE106 4.5 17.1 1.0 CB A:GLU111 4.6 17.8 1.0 CE1 A:HIS60 4.6 16.2 1.0 ND1 A:HIS60 4.8 16.2 1.0 CA A:GLU145 4.8 15.4 1.0 CB A:GLU145 4.8 18.1 1.0

Iron binding site 2 out of 2 in the Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:12.6 occ:0.60 OE2 B:GLU111 1.9 24.0 1.0 OE2 B:GLU57 2.0 27.9 1.0 O B:HOH453 2.1 24.8 1.0 OE2 B:GLU145 2.1 26.5 1.0 OE1 B:GLU145 2.2 24.3 1.0 ND1 B:HIS148 2.2 15.3 1.0 CD B:GLU145 2.4 25.1 1.0 CD B:GLU111 3.0 21.5 1.0 CD B:GLU57 3.0 21.5 1.0 CE1 B:HIS148 3.1 14.1 1.0 CG B:HIS148 3.4 12.8 1.0 OE1 B:GLU57 3.4 26.7 1.0 CG B:GLU111 3.6 18.1 1.0 CB B:HIS148 3.8 12.6 1.0 CG B:GLU145 3.9 20.6 1.0 OE1 B:GLU111 4.0 25.0 1.0 NE2 B:GLN53 4.0 21.3 1.0 NE2 B:HIS148 4.2 13.0 1.0 O B:HOH408 4.3 32.8 1.0 CG B:GLU57 4.4 18.4 1.0 CE2 B:PHE106 4.4 17.6 1.0 CD2 B:HIS148 4.4 14.4 1.0 CZ B:PHE106 4.5 16.9 1.0 CB B:GLU111 4.6 17.9 1.0 CE1 B:HIS60 4.7 14.5 1.0 CB B:GLU145 4.8 18.6 1.0 ND1 B:HIS60 4.8 15.9 1.0 CA B:GLU145 4.8 16.2 1.0

D.K.Wilson, W.S.Mak, J.B.Siegel. Protein 84 with Aldehyde Deformylating Oxygenase Activity From Sulfolobus Tokodaii (Orthorhombic Form) To Be Published.