Atomistry » Iron » PDB 5ve4-5vuw » 5vri
Atomistry »
  Iron »
    PDB 5ve4-5vuw »
      5vri »

Iron in PDB 5vri: Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form

Enzymatic activity of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form

All present enzymatic activity of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form:
3.1.8.1;

Protein crystallography data

The structure of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form, PDB code: 5vri was solved by J.Hiblot, G.Gotthard, P.Jacquet, D.Daude, C.Bergonzi, E.Chabriere, M.Elias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.71 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 87.170, 103.610, 152.610, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.4

Other elements in 5vri:

The structure of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form also contains other interesting chemical elements:

Cobalt (Co) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form (pdb code 5vri). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form, PDB code: 5vri:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 5vri

Go back to Iron Binding Sites List in 5vri
Iron binding site 1 out of 4 in the Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:8.4
occ:1.00
NE2 A:HIS22 1.9 15.4 1.0
NE2 A:HIS24 1.9 12.8 1.0
OQ1 A:KCX137 2.0 13.7 1.0
O A:HOH530 2.0 13.7 1.0
OD1 A:ASP256 2.1 13.7 1.0
CE1 A:HIS24 2.8 12.0 1.0
CE1 A:HIS22 2.8 15.9 1.0
CD2 A:HIS22 2.9 14.9 1.0
CX A:KCX137 3.0 13.0 1.0
CD2 A:HIS24 3.0 12.2 1.0
CG A:ASP256 3.0 14.7 1.0
OQ2 A:KCX137 3.3 13.6 1.0
OD2 A:ASP256 3.3 14.3 1.0
CO A:CO401 3.4 12.1 1.0
ND1 A:HIS24 3.9 11.5 1.0
ND1 A:HIS22 3.9 14.7 1.0
O A:HOH630 4.0 27.6 1.0
CG A:HIS22 4.0 14.8 1.0
CG A:HIS24 4.1 12.3 1.0
NZ A:KCX137 4.1 13.0 1.0
O1 A:EDO403 4.1 37.4 1.0
CE1 A:HIS199 4.3 15.7 1.0
CB A:ASP256 4.3 15.9 1.0
CG A:PRO67 4.4 16.2 1.0
NE2 A:HIS199 4.4 16.5 1.0
CA A:ASP256 4.8 16.0 1.0

Iron binding site 2 out of 4 in 5vri

Go back to Iron Binding Sites List in 5vri
Iron binding site 2 out of 4 in the Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe402

b:10.9
occ:1.00
NE2 B:HIS24 1.9 14.0 1.0
NE2 B:HIS22 1.9 15.2 1.0
OQ2 B:KCX137 2.0 13.7 1.0
O B:HOH523 2.0 12.5 1.0
OD1 B:ASP256 2.0 14.4 1.0
CE1 B:HIS24 2.8 13.9 1.0
CE1 B:HIS22 2.8 14.2 1.0
CD2 B:HIS22 3.0 13.6 1.0
CD2 B:HIS24 3.0 14.7 1.0
CG B:ASP256 3.0 16.6 1.0
CX B:KCX137 3.0 13.6 1.0
OQ1 B:KCX137 3.3 14.4 1.0
OD2 B:ASP256 3.4 14.4 1.0
CO B:CO401 3.5 13.9 1.0
ND1 B:HIS24 3.9 13.4 1.0
ND1 B:HIS22 3.9 14.9 1.0
CG B:HIS24 4.0 14.2 1.0
CG B:HIS22 4.1 15.0 1.0
NZ B:KCX137 4.1 14.1 1.0
O B:HOH518 4.1 26.5 1.0
CE1 B:HIS199 4.3 15.3 1.0
CB B:ASP256 4.3 14.8 1.0
CG B:PRO67 4.3 16.4 1.0
NE2 B:HIS199 4.5 15.1 1.0
O2 B:EDO404 4.5 34.5 1.0
CA B:ASP256 4.8 15.5 1.0
O B:ASP256 4.9 20.8 1.0

Iron binding site 3 out of 4 in 5vri

Go back to Iron Binding Sites List in 5vri
Iron binding site 3 out of 4 in the Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe402

b:9.3
occ:1.00
NE2 C:HIS24 1.9 13.7 1.0
NE2 C:HIS22 1.9 16.2 1.0
OQ2 C:KCX137 2.0 14.8 1.0
O C:HOH506 2.0 14.8 1.0
OD1 C:ASP256 2.1 14.5 1.0
CE1 C:HIS22 2.7 16.0 1.0
CE1 C:HIS24 2.8 12.8 1.0
CX C:KCX137 2.9 15.0 1.0
CD2 C:HIS24 3.0 12.7 1.0
CD2 C:HIS22 3.0 14.5 1.0
CG C:ASP256 3.0 15.7 1.0
OQ1 C:KCX137 3.2 15.2 1.0
OD2 C:ASP256 3.4 17.0 1.0
CO C:CO401 3.4 12.0 1.0
ND1 C:HIS22 3.9 15.2 1.0
ND1 C:HIS24 3.9 12.2 1.0
CG C:HIS24 4.0 12.9 1.0
NZ C:KCX137 4.1 15.2 1.0
CG C:HIS22 4.1 15.1 1.0
O C:HOH599 4.1 21.4 1.0
CE1 C:HIS199 4.2 16.7 1.0
CB C:ASP256 4.4 16.1 1.0
CG C:PRO67 4.4 16.2 1.0
NE2 C:HIS199 4.4 17.0 1.0
O2 C:EDO403 4.5 38.5 1.0
CA C:ASP256 4.8 14.3 1.0

Iron binding site 4 out of 4 in 5vri

Go back to Iron Binding Sites List in 5vri
Iron binding site 4 out of 4 in the Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Ssopox ASA6 Mutant (F46L-C258A-W263M-I280T) - Closed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe402

b:9.3
occ:1.00
NE2 D:HIS24 1.9 16.6 1.0
NE2 D:HIS22 1.9 17.2 1.0
OQ2 D:KCX137 2.0 15.4 1.0
O D:HOH506 2.0 13.3 1.0
OD1 D:ASP256 2.0 16.4 1.0
CE1 D:HIS22 2.8 15.3 1.0
CE1 D:HIS24 2.8 16.6 1.0
CD2 D:HIS24 3.0 15.7 1.0
CD2 D:HIS22 3.0 15.6 1.0
CX D:KCX137 3.0 16.6 1.0
CG D:ASP256 3.0 19.4 1.0
OQ1 D:KCX137 3.3 18.8 1.0
OD2 D:ASP256 3.5 18.9 1.0
CO D:CO401 3.5 14.0 1.0
ND1 D:HIS22 3.9 14.8 1.0
ND1 D:HIS24 3.9 14.8 1.0
O D:HOH610 4.0 25.9 1.0
CG D:HIS24 4.1 15.5 1.0
CG D:HIS22 4.1 15.4 1.0
NZ D:KCX137 4.1 17.0 1.0
CE1 D:HIS199 4.3 24.3 1.0
CB D:ASP256 4.3 18.6 1.0
CG D:PRO67 4.5 16.2 1.0
NE2 D:HIS199 4.5 26.7 1.0
O2 D:EDO404 4.6 39.3 1.0
CA D:ASP256 4.7 19.9 1.0

Reference:

P.Jacquet, J.Hiblot, D.Daude, C.Bergonzi, G.Gotthard, N.Armstrong, E.Chabriere, M.Elias. Rational Engineering of A Native Hyperthermostable Lactonase Into A Broad Spectrum Phosphotriesterase. Sci Rep V. 7 16745 2017.
ISSN: ESSN 2045-2322
PubMed: 29196634
DOI: 10.1038/S41598-017-16841-0
Page generated: Wed Aug 6 02:17:12 2025

Last articles

Mg in 4DUY
Mg in 4DR7
Mg in 4DR6
Mg in 4DR5
Mg in 4DUX
Mg in 4DUW
Mg in 4DUV
Mg in 4DUO
Mg in 4DUG
Mg in 4DTY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy