Iron in PDB 5xnm: Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

All present enzymatic activity of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum:
1.10.3.9;

The structure of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum also contains other interesting chemical elements:

Magnesium	(Mg)	314 atoms
Manganese	(Mn)	8 atoms
Calcium	(Ca)	2 atoms

The binding sites of Iron atom in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum (pdb code 5xnm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum, PDB code: 5xnm:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe402 b:8.7 occ:1.00 NE2 D:HIS215 2.0 23.6 1.0 NE2 A:HIS215 2.2 28.6 1.0 NE2 A:HIS272 2.3 35.3 1.0 NE2 D:HIS269 2.3 26.0 1.0 O3 D:BCT401 2.3 16.6 1.0 O2 D:BCT401 2.4 17.4 1.0 C D:BCT401 2.8 17.2 1.0 CD2 D:HIS215 2.9 21.9 1.0 CE1 D:HIS215 3.0 26.2 1.0 CD2 A:HIS215 3.1 25.7 1.0 CE1 A:HIS215 3.2 28.4 1.0 CD2 A:HIS272 3.2 30.3 1.0 CE1 D:HIS269 3.2 28.6 1.0 CD2 D:HIS269 3.3 23.1 1.0 CE1 A:HIS272 3.3 41.0 1.0 O1 D:BCT401 4.1 19.9 1.0 CG D:HIS215 4.1 22.4 1.0 ND1 D:HIS215 4.1 23.8 1.0 CG A:HIS215 4.2 29.0 1.0 ND1 A:HIS215 4.3 28.7 1.0 ND1 D:HIS269 4.4 23.0 1.0 CG A:HIS272 4.4 32.1 1.0 ND1 A:HIS272 4.4 36.6 1.0 CG D:HIS269 4.4 20.0 1.0 CG2 D:VAL219 4.7 31.4 1.0 OH D:TYR245 4.7 41.5 1.0 CG2 A:VAL219 4.7 44.3 1.0 OH A:TYR246 4.8 61.6 1.0 CD1 A:LEU275 4.9 38.0 1.0

Iron binding site 2 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe101 b:86.3 occ:1.00 FE F:HEM101 0.0 86.3 1.0 NC F:HEM101 2.0 76.7 1.0 ND F:HEM101 2.0 91.4 1.0 NB F:HEM101 2.0 89.7 1.0 NA F:HEM101 2.0 94.2 1.0 NE2 F:HIS18 2.0 82.0 1.0 NE2 E:HIS23 2.1 0.0 1.0 CD2 E:HIS23 2.9 0.8 1.0 CD2 F:HIS18 3.0 85.8 1.0 C1A F:HEM101 3.0 99.7 1.0 C4D F:HEM101 3.0 98.5 1.0 C4A F:HEM101 3.0 0.5 1.0 C1C F:HEM101 3.0 78.5 1.0 C1D F:HEM101 3.0 89.5 1.0 C1B F:HEM101 3.0 0.6 1.0 C4B F:HEM101 3.0 83.9 1.0 C4C F:HEM101 3.1 76.4 1.0 CE1 F:HIS18 3.1 83.0 1.0 CE1 E:HIS23 3.1 0.4 1.0 CHA F:HEM101 3.4 99.5 1.0 CHC F:HEM101 3.4 75.6 1.0 CHB F:HEM101 3.4 0.5 1.0 CHD F:HEM101 3.4 84.1 1.0 CG E:HIS23 4.1 0.8 1.0 CG F:HIS18 4.1 83.1 1.0 ND1 E:HIS23 4.1 0.1 1.0 ND1 F:HIS18 4.2 79.5 1.0 C2A F:HEM101 4.2 0.1 1.0 C3A F:HEM101 4.2 0.4 1.0 C3D F:HEM101 4.2 0.1 1.0 C2D F:HEM101 4.2 98.9 1.0 C2C F:HEM101 4.3 77.3 1.0 C2B F:HEM101 4.3 0.7 1.0 C3B F:HEM101 4.3 95.2 1.0 C3C F:HEM101 4.3 79.2 1.0

Iron binding site 3 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe402 b:8.7 occ:1.00 NE2 d:HIS215 2.0 23.8 1.0 NE2 a:HIS215 2.2 29.6 1.0 NE2 a:HIS272 2.3 36.4 1.0 NE2 d:HIS269 2.3 25.8 1.0 O3 d:BCT401 2.3 16.6 1.0 O2 d:BCT401 2.4 17.4 1.0 C d:BCT401 2.8 17.2 1.0 CD2 d:HIS215 2.9 22.1 1.0 CE1 d:HIS215 3.0 26.4 1.0 CD2 a:HIS215 3.1 26.8 1.0 CE1 a:HIS215 3.2 29.4 1.0 CD2 a:HIS272 3.2 31.4 1.0 CE1 d:HIS269 3.2 28.5 1.0 CD2 d:HIS269 3.3 22.9 1.0 CE1 a:HIS272 3.3 42.1 1.0 O1 d:BCT401 4.1 19.9 1.0 CG d:HIS215 4.1 22.5 1.0 ND1 d:HIS215 4.1 24.0 1.0 CG a:HIS215 4.2 30.1 1.0 ND1 a:HIS215 4.3 29.7 1.0 ND1 d:HIS269 4.4 22.8 1.0 CG a:HIS272 4.4 33.3 1.0 ND1 a:HIS272 4.4 37.8 1.0 CG d:HIS269 4.4 19.8 1.0 CG2 d:VAL219 4.7 32.5 1.0 OH d:TYR245 4.7 40.6 1.0 CG2 a:VAL219 4.7 42.1 1.0 OH a:TYR246 4.8 59.2 1.0 CD1 a:LEU275 4.9 41.1 1.0

Iron binding site 4 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ f:Fe101 b:86.3 occ:1.00 FE f:HEM101 0.0 86.3 1.0 NC f:HEM101 2.0 76.7 1.0 ND f:HEM101 2.0 91.4 1.0 NB f:HEM101 2.0 89.7 1.0 NA f:HEM101 2.0 94.2 1.0 NE2 f:HIS18 2.0 81.8 1.0 NE2 e:HIS23 2.1 0.4 1.0 CD2 e:HIS23 2.9 0.2 1.0 CD2 f:HIS18 3.0 85.6 1.0 C1A f:HEM101 3.0 99.7 1.0 C4D f:HEM101 3.0 98.5 1.0 C4A f:HEM101 3.0 0.5 1.0 C1C f:HEM101 3.0 78.5 1.0 C1D f:HEM101 3.0 89.5 1.0 C4B f:HEM101 3.0 83.9 1.0 C1B f:HEM101 3.0 0.6 1.0 C4C f:HEM101 3.1 76.4 1.0 CE1 f:HIS18 3.1 82.8 1.0 CE1 e:HIS23 3.1 0.8 1.0 CHA f:HEM101 3.4 99.5 1.0 CHC f:HEM101 3.4 75.6 1.0 CHB f:HEM101 3.4 0.5 1.0 CHD f:HEM101 3.4 84.1 1.0 CG e:HIS23 4.1 0.2 1.0 CG f:HIS18 4.1 82.9 1.0 ND1 e:HIS23 4.1 0.6 1.0 ND1 f:HIS18 4.2 79.4 1.0 C2A f:HEM101 4.2 0.1 1.0 C3A f:HEM101 4.2 0.4 1.0 C3D f:HEM101 4.2 0.1 1.0 C2D f:HEM101 4.2 98.9 1.0 C2C f:HEM101 4.3 77.3 1.0 C2B f:HEM101 4.3 0.7 1.0 C3B f:HEM101 4.3 95.2 1.0 C3C f:HEM101 4.3 79.2 1.0

X.Su, J.Ma, X.Wei, P.Cao, D.Zhu, W.Chang, Z.Liu, X.Zhang, M.Li. Structure and Assembly Mechanism of Plant C2S2M2-Type Psii-Lhcii Supercomplex Science V. 357 815 2017.
ISSN: ESSN 1095-9203
PubMed: 28839073
DOI: 10.1126/SCIENCE.AAN0327