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Iron in PDB 5xnt: Structure of CYP106A2 From Bacillus Sp. Pamc 23377

Protein crystallography data

The structure of Structure of CYP106A2 From Bacillus Sp. Pamc 23377, PDB code: 5xnt was solved by C.W.Lee, K.-H.Kim, D.Bikash, S.-H.Park, H.Park, T.-J.Oh, J.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.68 / 2.70
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 77.658, 77.658, 282.216, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 25.7

Iron Binding Sites:

The binding sites of Iron atom in the Structure of CYP106A2 From Bacillus Sp. Pamc 23377 (pdb code 5xnt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of CYP106A2 From Bacillus Sp. Pamc 23377, PDB code: 5xnt:

Iron binding site 1 out of 1 in 5xnt

Go back to Iron Binding Sites List in 5xnt
Iron binding site 1 out of 1 in the Structure of CYP106A2 From Bacillus Sp. Pamc 23377


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of CYP106A2 From Bacillus Sp. Pamc 23377 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:33.7
occ:1.00
FE A:HEM501 0.0 33.7 1.0
ND A:HEM501 1.9 30.5 1.0
NA A:HEM501 2.0 32.5 1.0
NB A:HEM501 2.1 30.7 1.0
NC A:HEM501 2.1 27.9 1.0
SG A:CYS355 2.3 39.6 1.0
C1D A:HEM501 2.9 31.6 1.0
C4D A:HEM501 2.9 31.0 1.0
C1A A:HEM501 3.0 34.0 1.0
C4A A:HEM501 3.0 32.8 1.0
C1B A:HEM501 3.0 32.7 1.0
C4B A:HEM501 3.0 31.7 1.0
C4C A:HEM501 3.0 26.4 1.0
C1C A:HEM501 3.1 28.6 1.0
CB A:CYS355 3.3 42.2 1.0
CHA A:HEM501 3.3 32.4 1.0
CHD A:HEM501 3.3 28.9 1.0
CHB A:HEM501 3.4 33.4 1.0
CHC A:HEM501 3.4 29.7 1.0
CA A:CYS355 4.0 42.5 1.0
C2D A:HEM501 4.1 33.0 1.0
C3D A:HEM501 4.1 32.8 1.0
O A:ALA243 4.1 39.3 1.0
C2A A:HEM501 4.2 36.5 1.0
C3A A:HEM501 4.2 34.7 1.0
C3C A:HEM501 4.2 28.3 1.0
C2B A:HEM501 4.2 33.8 1.0
C2C A:HEM501 4.3 29.0 1.0
C3B A:HEM501 4.3 30.6 1.0
N A:GLY357 4.7 37.1 1.0
C A:CYS355 4.8 41.5 1.0
N A:LEU356 4.9 41.9 1.0
CB A:ALA243 4.9 32.4 1.0

Reference:

K.H.Kim, C.W.Lee, B.Dangi, S.H.Park, H.Park, T.J.Oh, J.H.Lee. Crystal Structure and Functional Characterization of A Cytochrome P450 (BACYP106A2) Frombacillussp. Pamc 23377. J. Microbiol. Biotechnol. V. 27 1472 2017.
ISSN: ESSN 1738-8872
PubMed: 28633515
DOI: 10.4014/JMB.1706.06013
Page generated: Wed Aug 6 02:59:20 2025

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