Iron in PDB 6a3l: Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12

The structure of Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12, PDB code: 6a3l was solved by A.Suka, H.Oki, Y.Kato, K.Kawahara, T.Ohkubo, T.Maruno, Y.Kobayashi, S.Fujii, S.Wakai, Y.Sambongi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.57 / 2.14
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.751, 69.707, 45.598, 90.00, 112.19, 90.00
R / Rfree (%)	21.5 / 27.2

The binding sites of Iron atom in the Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12 (pdb code 6a3l). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12, PDB code: 6a3l:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:48.8 occ:1.00 FE A:HEC201 0.0 48.8 1.0 NC A:HEC201 2.0 41.7 1.0 NA A:HEC201 2.0 44.8 1.0 ND A:HEC201 2.0 43.3 1.0 NB A:HEC201 2.1 46.7 1.0 NE2 A:HIS123 2.1 49.1 1.0 C4C A:HEC201 3.0 43.0 1.0 C1D A:HEC201 3.0 42.9 1.0 C4A A:HEC201 3.0 43.0 1.0 C1C A:HEC201 3.1 46.2 1.0 C1A A:HEC201 3.1 41.7 1.0 CE1 A:HIS123 3.1 48.2 1.0 C1B A:HEC201 3.1 44.7 1.0 C4D A:HEC201 3.1 43.0 1.0 CD2 A:HIS123 3.1 44.7 1.0 C4B A:HEC201 3.2 46.2 1.0 CD1 A:PHE17 3.3 43.5 1.0 CHD A:HEC201 3.4 41.8 1.0 CHB A:HEC201 3.4 44.1 1.0 CE1 A:PHE17 3.4 40.9 1.0 CHA A:HEC201 3.5 43.0 1.0 CHC A:HEC201 3.5 47.5 1.0 CG A:PHE17 3.8 40.7 1.0 CZ A:PHE17 4.1 41.4 1.0 ND1 A:HIS123 4.2 46.7 1.0 CG A:HIS123 4.2 48.5 1.0 C3A A:HEC201 4.3 42.3 1.0 C2A A:HEC201 4.3 41.4 1.0 C2D A:HEC201 4.3 44.9 1.0 C3C A:HEC201 4.3 42.7 1.0 C2C A:HEC201 4.3 44.4 1.0 C3D A:HEC201 4.3 44.8 1.0 C2B A:HEC201 4.3 43.6 1.0 C3B A:HEC201 4.4 43.2 1.0 CD2 A:PHE17 4.4 40.6 1.0 CB A:PHE17 4.4 42.4 1.0 CE2 A:PHE17 4.5 43.5 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome C' From Shewanella Violacea DSS12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:37.9 occ:1.00 FE B:HEC201 0.0 37.9 1.0 NC B:HEC201 2.0 36.2 1.0 NA B:HEC201 2.0 34.7 1.0 ND B:HEC201 2.0 33.5 1.0 NB B:HEC201 2.0 30.4 1.0 NE2 B:HIS123 2.3 37.5 1.0 C4C B:HEC201 3.0 34.4 1.0 C1B B:HEC201 3.0 32.4 1.0 C1D B:HEC201 3.0 34.0 1.0 C4A B:HEC201 3.0 35.6 1.0 C1C B:HEC201 3.1 36.7 1.0 CD1 B:PHE17 3.1 32.8 1.0 C4D B:HEC201 3.1 36.1 1.0 C4B B:HEC201 3.1 31.2 1.0 C1A B:HEC201 3.1 34.5 1.0 CE1 B:PHE17 3.2 32.8 1.0 CD2 B:HIS123 3.2 38.3 1.0 CE1 B:HIS123 3.3 41.1 1.0 CHD B:HEC201 3.4 35.0 1.0 CHB B:HEC201 3.4 34.7 1.0 CHC B:HEC201 3.5 35.4 1.0 CHA B:HEC201 3.5 37.3 1.0 CG B:PHE17 3.7 35.0 1.0 CZ B:PHE17 3.8 32.1 1.0 C3C B:HEC201 4.2 32.9 1.0 CD2 B:PHE17 4.2 35.0 1.0 C2B B:HEC201 4.2 34.6 1.0 C2D B:HEC201 4.3 35.5 1.0 C3A B:HEC201 4.3 35.0 1.0 C2C B:HEC201 4.3 34.2 1.0 C2A B:HEC201 4.3 33.0 1.0 C3B B:HEC201 4.3 34.4 1.0 C3D B:HEC201 4.3 35.2 1.0 CE2 B:PHE17 4.3 31.8 1.0 ND1 B:HIS123 4.4 41.0 1.0 CB B:PHE17 4.4 33.0 1.0 CG B:HIS123 4.4 43.0 1.0

A.Suka, H.Oki, Y.Kato, K.Kawahara, T.Ohkubo, T.Maruno, Y.Kobayashi, S.Fujii, S.Wakai, L.Lisdiana, Y.Sambongi. Stability of Cytochromes C' From Psychrophilic and Piezophilic Shewanella Species: Implications For Complex Multiple Adaptation to Low Temperature and High Hydrostatic Pressure. Extremophiles V. 23 239 2019.
ISSN: ESSN 1433-4909
PubMed: 30689055
DOI: 10.1007/S00792-019-01077-9