Atomistry » Iron » PDB 6ajo-6ayc » 6alo
Atomistry »
  Iron »
    PDB 6ajo-6ayc »
      6alo »

Iron in PDB 6alo: Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate

Enzymatic activity of Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate

All present enzymatic activity of Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate:
1.14.11.41;

Protein crystallography data

The structure of Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate, PDB code: 6alo was solved by N.P.Dunham, A.J.Mitchell, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.39 / 1.79
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.760, 66.653, 62.889, 90.00, 109.21, 90.00
R / Rfree (%) 17.5 / 20.3

Iron Binding Sites:

The binding sites of Iron atom in the Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate (pdb code 6alo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate, PDB code: 6alo:

Iron binding site 1 out of 1 in 6alo

Go back to Iron Binding Sites List in 6alo
Iron binding site 1 out of 1 in the Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Vioc L-Arginine Hydroxylase Bound to Fe(II), L-Arginine, and A Peroxysuccinate Intermediate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:15.7
occ:1.00
 O2 A:OKG403 2.0 25.3 1.0
OE1 A:GLU170 2.1 16.8 1.0
NE2 A:HIS316 2.2 14.3 1.0
O5 A:OKG403 2.2 20.9 1.0
NE2 A:HIS168 2.2 14.3 1.0
O1 A:OKG403 2.9 24.8 1.0
CE1 A:HIS316 2.9 14.2 1.0
C2 A:OKG403 3.0 21.9 1.0
CD A:GLU170 3.1 17.4 1.0
CE1 A:HIS168 3.1 14.2 1.0
CD2 A:HIS316 3.1 14.0 1.0
CD2 A:HIS168 3.3 14.1 1.0
OE2 A:GLU170 3.4 19.3 1.0
N A:ARG402 3.9 21.4 1.0
ND1 A:HIS316 4.0 14.1 1.0
CG A:HIS316 4.1 13.8 1.0
ND1 A:HIS168 4.2 14.0 1.0
CG A:HIS168 4.4 13.8 1.0
CG A:GLU170 4.4 16.4 1.0
C3 A:OKG403 4.4 20.6 1.0
CG A:ARG402 4.6 20.9 1.0
CB A:ARG402 4.7 21.1 1.0
CB A:GLU170 4.7 15.4 1.0
O A:HIS316 4.9 12.5 1.0
CD2 A:LEU165 4.9 15.2 1.0
C4 A:OKG403 4.9 19.6 1.0
CA A:ARG402 4.9 21.2 1.0
CA A:GLU170 4.9 14.9 1.0
NH1 A:ARG334 5.0 24.1 1.0

Reference:

A.J.Mitchell, N.P.Dunham, R.J.Martinie, J.A.Bergman, C.J.Pollock, K.Hu, B.D.Allen, W.C.Chang, A.Silakov, J.M.Bollinger, C.Krebs, A.K.Boal. Visualizing the Reaction Cycle in An Iron(II)- and 2-(Oxo)-Glutarate-Dependent Hydroxylase. J. Am. Chem. Soc. V. 139 13830 2017.
ISSN: ESSN 1520-5126
PubMed: 28823155
DOI: 10.1021/JACS.7B07374
Page generated: Tue Aug 6 13:46:20 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy