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Iron in PDB 6bgf: Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase

Enzymatic activity of Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase

All present enzymatic activity of Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase:
1.13.11.20;

Protein crystallography data

The structure of Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase, PDB code: 6bgf was solved by A.Liu, J.Li, I.Shin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.90 / 2.25
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 131.295, 131.295, 34.218, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 21.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase (pdb code 6bgf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase, PDB code: 6bgf:

Iron binding site 1 out of 1 in 6bgf

Go back to Iron Binding Sites List in 6bgf
Iron binding site 1 out of 1 in the Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cysteine-Bound Ferrous Form of the Crosslinked Human Cysteine Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:38.2
occ:1.00
 NE2 A:HIS86 2.3 37.0 1.0
NE2 A:HIS88 2.3 35.0 1.0
NE2 A:HIS140 2.4 36.8 1.0
N A:CYS301 2.6 38.5 1.0
O A:HOH408 2.6 46.4 1.0
SG A:CYS301 2.6 46.4 1.0
CD2 A:HIS86 3.0 36.0 1.0
CA A:CYS301 3.2 45.3 1.0
CE1 A:HIS88 3.2 37.8 1.0
CD2 A:HIS140 3.2 35.9 1.0
CB A:CYS301 3.3 41.3 1.0
CD2 A:HIS88 3.4 36.7 1.0
CE1 A:HIS140 3.4 35.6 1.0
CE1 A:HIS86 3.5 35.8 1.0
OH A:TYR157 4.2 39.5 1.0
CG A:HIS86 4.3 33.5 1.0
O A:HOH467 4.3 43.5 1.0
ND1 A:HIS88 4.3 40.5 1.0
ND1 A:HIS86 4.4 37.5 1.0
CG A:HIS140 4.4 32.1 1.0
CG A:HIS88 4.5 34.2 1.0
ND1 A:HIS140 4.5 34.5 1.0
C A:CYS301 4.6 53.5 1.0
SG A:CYS93 4.7 46.2 1.0
CG2 A:VAL142 4.9 36.8 1.0

Reference:

J.Li, W.P.Griffith, I.Davis, I.Shin, J.Wang, F.Li, Y.Wang, D.J.Wherritt, A.Liu. Cleavage of A Carbon-Fluorine Bond By An Engineered Cysteine Dioxygenase. Nat.Chem.Biol. V. 14 853 2018.
ISSN: ESSN 1552-4469
PubMed: 29942080
DOI: 10.1038/S41589-018-0085-5
Page generated: Wed Aug 6 04:08:17 2025

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