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Iron in PDB 6dxi: Crystal Structure of H-Nox Protein From Nostoc Sp V52W/L67W Double- Mutant.

Protein crystallography data

The structure of Crystal Structure of H-Nox Protein From Nostoc Sp V52W/L67W Double- Mutant., PDB code: 6dxi was solved by A.Weichsel, J.A.Kievenaar, W.R.Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.172, 65.172, 103.264, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 25.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of H-Nox Protein From Nostoc Sp V52W/L67W Double- Mutant. (pdb code 6dxi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of H-Nox Protein From Nostoc Sp V52W/L67W Double- Mutant., PDB code: 6dxi:

Iron binding site 1 out of 1 in 6dxi

Go back to Iron Binding Sites List in 6dxi
Iron binding site 1 out of 1 in the Crystal Structure of H-Nox Protein From Nostoc Sp V52W/L67W Double- Mutant.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of H-Nox Protein From Nostoc Sp V52W/L67W Double- Mutant. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:32.2
occ:1.00
FE A:HEM500 0.0 32.2 1.0
ND A:HEM500 1.9 33.1 1.0
NA A:HEM500 2.0 29.6 1.0
NB A:HEM500 2.0 30.8 1.0
NC A:HEM500 2.0 30.1 1.0
NE2 A:HIS105 2.2 30.4 1.0
C1D A:HEM500 2.9 32.3 1.0
CE1 A:HIS105 2.9 33.9 1.0
C4B A:HEM500 2.9 30.2 1.0
C4D A:HEM500 3.0 29.3 1.0
C4A A:HEM500 3.0 30.9 1.0
C1B A:HEM500 3.0 31.3 1.0
C1C A:HEM500 3.0 32.1 1.0
C1A A:HEM500 3.0 29.4 1.0
C4C A:HEM500 3.0 31.2 1.0
CHD A:HEM500 3.3 30.7 1.0
CHC A:HEM500 3.4 32.9 1.0
CHB A:HEM500 3.4 29.3 1.0
CD2 A:HIS105 3.4 31.0 1.0
CHA A:HEM500 3.4 27.1 1.0
NE1 A:TRP74 3.5 34.6 1.0
C2D A:HEM500 4.1 29.5 1.0
ND1 A:HIS105 4.2 30.9 1.0
C3B A:HEM500 4.2 31.5 1.0
C3A A:HEM500 4.2 29.8 1.0
C3D A:HEM500 4.2 31.4 1.0
C2B A:HEM500 4.2 32.5 1.0
C2A A:HEM500 4.2 28.6 1.0
C2C A:HEM500 4.2 31.5 1.0
C3C A:HEM500 4.2 31.7 1.0
CD1 A:TRP74 4.3 35.4 1.0
CG A:HIS105 4.4 29.2 1.0
CE2 A:TRP74 4.5 34.8 1.0
CZ2 A:TRP74 4.8 36.3 1.0
CD A:PRO118 5.0 37.8 1.0

Reference:

J.A.Kievenaar, J.T.Croft, J.Li, C.Feng, A.Weichsel, W.R.Montfort. Structure of H-Nox Domain From Cyanobacteria Nostoc Sp To Be Published.
Page generated: Wed Aug 6 05:30:29 2025

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