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Iron in PDB 6e04: Sperm Whale Myoglobin 1-Nitrosopropane

Protein crystallography data

The structure of Sperm Whale Myoglobin 1-Nitrosopropane, PDB code: 6e04 was solved by V.E.Herrera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.34 / 2.00
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 90.470, 90.470, 45.341, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 20.5

Other elements in 6e04:

The structure of Sperm Whale Myoglobin 1-Nitrosopropane also contains other interesting chemical elements:

Sodium (Na) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Sperm Whale Myoglobin 1-Nitrosopropane (pdb code 6e04). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Sperm Whale Myoglobin 1-Nitrosopropane, PDB code: 6e04:

Iron binding site 1 out of 1 in 6e04

Go back to Iron Binding Sites List in 6e04
Iron binding site 1 out of 1 in the Sperm Whale Myoglobin 1-Nitrosopropane


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Sperm Whale Myoglobin 1-Nitrosopropane within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:13.3
occ:1.00
FE A:HEM201 0.0 13.3 1.0
N1 A:NP0202 1.8 20.3 1.0
ND A:HEM201 1.9 12.0 1.0
NA A:HEM201 2.0 12.3 1.0
NC A:HEM201 2.0 11.9 1.0
NB A:HEM201 2.0 12.9 1.0
NE2 A:HIS93 2.1 9.8 1.0
O1 A:NP0202 2.7 19.3 1.0
C4D A:HEM201 2.9 11.9 1.0
C1D A:HEM201 2.9 13.2 1.0
C1A A:HEM201 3.0 12.1 1.0
C4C A:HEM201 3.0 12.4 1.0
C1 A:NP0202 3.0 23.1 1.0
CE1 A:HIS93 3.0 9.8 1.0
C1B A:HEM201 3.0 12.7 1.0
C4B A:HEM201 3.0 12.4 1.0
C4A A:HEM201 3.1 12.2 1.0
C1C A:HEM201 3.1 11.7 1.0
CD2 A:HIS93 3.1 10.5 1.0
CHA A:HEM201 3.4 12.3 1.0
CHD A:HEM201 3.4 13.3 1.0
CHC A:HEM201 3.5 12.3 1.0
CHB A:HEM201 3.5 12.7 1.0
ND1 A:HIS93 4.2 10.6 1.0
C2 A:NP0202 4.2 27.6 1.0
C3D A:HEM201 4.2 13.2 1.0
C2A A:HEM201 4.2 12.2 1.0
C2D A:HEM201 4.2 13.1 1.0
CG A:HIS93 4.2 10.4 1.0
C3A A:HEM201 4.2 11.7 1.0
C3C A:HEM201 4.3 13.2 1.0
C2B A:HEM201 4.3 12.7 1.0
C2C A:HEM201 4.3 12.2 1.0
C3B A:HEM201 4.3 12.6 1.0
NE2 A:HIS64 4.6 15.7 1.0
CG2 A:VAL68 4.8 11.3 1.0
C3 A:NP0202 4.9 28.9 1.0

Reference:

V.E.Herrera, V.E.Herrera. N/A N/A.
Page generated: Wed Aug 6 05:33:40 2025

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