Atomistry » Iron » PDB 6fmo-6g5t » 6fz6
Atomistry »
  Iron »
    PDB 6fmo-6g5t »
      6fz6 »

Iron in PDB 6fz6: Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus

Enzymatic activity of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus

All present enzymatic activity of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus:
2.1.1.192;

Protein crystallography data

The structure of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus, PDB code: 6fz6 was solved by P.Hinchliffe, J.M.Shaw, J.Spencer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.29 / 1.42
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 131.840, 53.140, 113.570, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.7

Other elements in 6fz6:

The structure of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus also contains other interesting chemical elements:

Bromine (Br) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus (pdb code 6fz6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus, PDB code: 6fz6:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 1 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:18.9
occ:1.00
FE1 A:SF4401 0.0 18.9 1.0
S2 A:SF4401 2.2 18.9 1.0
S3 A:SF4401 2.3 17.9 1.0
SG A:CYS110 2.3 17.3 1.0
S4 A:SF4401 2.3 19.5 1.0
FE3 A:SF4401 2.7 19.4 1.0
FE2 A:SF4401 2.7 18.7 1.0
FE4 A:SF4401 2.9 19.2 1.0
CB A:CYS110 3.2 16.5 1.0
S1 A:SF4401 3.9 18.8 1.0
N A:SAH402 4.0 18.6 1.0
CB A:VAL112 4.0 17.1 1.0
CG2 A:VAL112 4.4 20.2 1.0
C A:GLY160 4.6 16.1 1.0
N A:VAL112 4.6 17.2 1.0
CA A:CYS110 4.6 15.8 1.0
O A:GLY160 4.7 16.9 1.0
N A:GLU161 4.7 15.3 1.0
N A:GLY113 4.8 18.6 1.0
SG A:CYS117 4.8 20.3 1.0
CA A:VAL112 4.9 17.7 1.0
CB A:GLU161 4.9 17.7 1.0
SG A:CYS114 4.9 19.2 1.0
CA A:GLY160 4.9 18.1 1.0
CG1 A:VAL112 4.9 20.5 1.0
O A:SAH402 5.0 20.0 1.0

Iron binding site 2 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 2 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:18.7
occ:1.00
FE2 A:SF4401 0.0 18.7 1.0
S1 A:SF4401 2.2 18.8 1.0
S3 A:SF4401 2.3 17.9 1.0
S4 A:SF4401 2.3 19.5 1.0
SG A:CYS114 2.3 19.2 1.0
FE3 A:SF4401 2.7 19.4 1.0
FE1 A:SF4401 2.7 18.9 1.0
FE4 A:SF4401 2.8 19.2 1.0
CB A:CYS114 3.2 20.8 1.0
S2 A:SF4401 3.8 18.9 1.0
O A:HOH688 3.8 20.1 1.0
N A:CYS114 3.9 18.7 1.0
O A:SAH402 4.1 20.0 1.0
CG1 A:VAL112 4.2 20.5 1.0
CA A:CYS114 4.2 17.0 1.0
CB A:VAL112 4.2 17.1 1.0
CB A:CYS117 4.5 21.6 1.0
SG A:CYS117 4.6 20.3 1.0
N A:SAH402 4.8 18.6 1.0
SG A:CYS110 4.8 17.3 1.0
CB A:SER194 4.8 19.2 1.0
N A:GLY113 4.8 18.6 1.0

Iron binding site 3 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 3 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:19.4
occ:1.00
FE3 A:SF4401 0.0 19.4 1.0
S1 A:SF4401 2.3 18.8 1.0
S2 A:SF4401 2.3 18.9 1.0
S4 A:SF4401 2.3 19.5 1.0
SG A:CYS117 2.3 20.3 1.0
FE2 A:SF4401 2.7 18.7 1.0
FE1 A:SF4401 2.7 18.9 1.0
FE4 A:SF4401 2.9 19.2 1.0
CB A:CYS117 3.1 21.6 1.0
S3 A:SF4401 3.9 17.9 1.0
N A:GLY120 4.3 21.9 1.0
SD A:SAH402 4.4 20.1 1.0
CB A:THR119 4.4 21.6 1.0
CA A:CYS117 4.6 20.5 1.0
C8 A:SAH402 4.6 19.7 1.0
SG A:CYS114 4.7 19.2 1.0
CB A:CYS114 4.8 20.8 1.0
SG A:CYS110 4.8 17.3 1.0
CA A:GLY120 4.8 23.4 1.0
O A:SAH402 4.9 20.0 1.0
CB A:CYS110 4.9 16.5 1.0
N A:SAH402 4.9 18.6 1.0

Iron binding site 4 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 4 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:19.2
occ:1.00
FE4 A:SF4401 0.0 19.2 1.0
O A:SAH402 2.3 20.0 1.0
N A:SAH402 2.3 18.6 1.0
S1 A:SF4401 2.3 18.8 1.0
S3 A:SF4401 2.3 17.9 1.0
S2 A:SF4401 2.4 18.9 1.0
FE2 A:SF4401 2.8 18.7 1.0
FE1 A:SF4401 2.9 18.9 1.0
FE3 A:SF4401 2.9 19.4 1.0
C A:SAH402 3.0 18.6 1.0
CA A:SAH402 3.1 17.1 1.0
SD A:SAH402 3.2 20.1 1.0
CG A:SAH402 3.6 17.6 1.0
CB A:SAH402 3.9 17.6 1.0
O A:HOH688 4.0 20.1 1.0
S4 A:SF4401 4.0 19.5 1.0
OXT A:SAH402 4.2 19.5 1.0
O A:GLY160 4.4 16.9 1.0
C2' A:SAH402 4.6 22.3 1.0
OE1 A:GLU161 4.7 18.6 1.0
C5' A:SAH402 4.8 20.3 1.0
C3' A:SAH402 4.8 20.8 1.0
SG A:CYS114 4.8 19.2 1.0
CB A:SER194 4.8 19.2 1.0
SG A:CYS110 4.8 17.3 1.0

Iron binding site 5 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 5 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:16.4
occ:1.00
FE1 B:SF4401 0.0 16.4 1.0
S4 B:SF4401 2.3 15.3 1.0
S3 B:SF4401 2.3 16.9 1.0
S2 B:SF4401 2.3 17.0 1.0
SG B:CYS110 2.3 15.3 1.0
FE4 B:SF4401 2.7 17.2 1.0
FE3 B:SF4401 2.7 16.3 1.0
FE2 B:SF4401 2.8 17.2 1.0
CB B:CYS110 3.2 15.5 1.0
S1 B:SF4401 3.9 16.5 1.0
N B:SAH402 3.9 16.4 1.0
CB B:VAL112 4.0 15.2 1.0
CG2 B:VAL112 4.4 18.1 1.0
C B:GLY160 4.6 15.7 1.0
N B:VAL112 4.6 15.2 1.0
CA B:CYS110 4.6 14.6 1.0
N B:GLU161 4.7 15.1 1.0
O B:GLY160 4.8 16.3 1.0
CB B:GLU161 4.8 16.2 1.0
SG B:CYS114 4.8 16.8 1.0
CA B:GLY160 4.8 14.6 1.0
CA B:VAL112 4.8 14.2 1.0
SG B:CYS117 4.9 17.6 1.0
N B:GLY113 4.9 16.4 1.0
CG1 B:VAL112 4.9 17.7 1.0
O B:SAH402 4.9 18.0 1.0

Iron binding site 6 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 6 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:17.2
occ:1.00
FE2 B:SF4401 0.0 17.2 1.0
N B:SAH402 2.3 16.4 1.0
O B:SAH402 2.3 18.0 1.0
S4 B:SF4401 2.3 15.3 1.0
S1 B:SF4401 2.3 16.5 1.0
S3 B:SF4401 2.4 16.9 1.0
FE3 B:SF4401 2.8 16.3 1.0
FE1 B:SF4401 2.8 16.4 1.0
FE4 B:SF4401 2.9 17.2 1.0
C B:SAH402 3.0 17.8 1.0
CA B:SAH402 3.1 17.4 1.0
SD B:SAH402 3.1 19.2 1.0
CG B:SAH402 3.6 18.2 1.0
CB B:SAH402 3.8 18.6 1.0
S2 B:SF4401 4.0 17.0 1.0
O B:HOH677 4.1 19.4 1.0
OXT B:SAH402 4.2 18.8 1.0
O B:GLY160 4.4 16.3 1.0
C2' B:SAH402 4.7 24.0 1.0
OE1 B:GLU161 4.7 17.5 1.0
C5' B:SAH402 4.7 20.1 1.0
C3' B:SAH402 4.8 22.9 1.0
SG B:CYS114 4.8 16.8 1.0
SG B:CYS110 4.8 15.3 1.0
CB B:SER194 4.9 15.4 1.0
C B:GLY160 5.0 15.7 1.0

Iron binding site 7 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 7 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:16.3
occ:1.00
FE3 B:SF4401 0.0 16.3 1.0
S4 B:SF4401 2.3 15.3 1.0
S1 B:SF4401 2.3 16.5 1.0
SG B:CYS114 2.3 16.8 1.0
S2 B:SF4401 2.3 17.0 1.0
FE4 B:SF4401 2.7 17.2 1.0
FE1 B:SF4401 2.7 16.4 1.0
FE2 B:SF4401 2.8 17.2 1.0
CB B:CYS114 3.2 17.5 1.0
O B:HOH677 3.8 19.4 1.0
S3 B:SF4401 3.9 16.9 1.0
N B:CYS114 3.9 15.0 1.0
O B:SAH402 4.1 18.0 1.0
CA B:CYS114 4.2 15.1 1.0
CG1 B:VAL112 4.2 17.7 1.0
CB B:VAL112 4.2 15.2 1.0
CB B:CYS117 4.5 18.8 1.0
SG B:CYS117 4.7 17.6 1.0
N B:SAH402 4.7 16.4 1.0
CB B:SER194 4.8 15.4 1.0
SG B:CYS110 4.8 15.3 1.0
N B:GLY113 4.9 16.4 1.0

Iron binding site 8 out of 8 in 6fz6

Go back to Iron Binding Sites List in 6fz6
Iron binding site 8 out of 8 in the Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:17.2
occ:1.00
FE4 B:SF4401 0.0 17.2 1.0
S3 B:SF4401 2.2 16.9 1.0
S1 B:SF4401 2.3 16.5 1.0
S2 B:SF4401 2.3 17.0 1.0
SG B:CYS117 2.3 17.6 1.0
FE1 B:SF4401 2.7 16.4 1.0
FE3 B:SF4401 2.7 16.3 1.0
FE2 B:SF4401 2.9 17.2 1.0
CB B:CYS117 3.2 18.8 1.0
S4 B:SF4401 3.9 15.3 1.0
N B:GLY120 4.2 16.9 1.0
SD B:SAH402 4.3 19.2 1.0
CB B:THR119 4.4 17.9 1.0
CA B:CYS117 4.6 18.2 1.0
C8 B:SAH402 4.7 21.1 1.0
CB B:CYS114 4.7 17.5 1.0
SG B:CYS114 4.7 16.8 1.0
SG B:CYS110 4.8 15.3 1.0
CA B:GLY120 4.8 18.9 1.0
CB B:CYS110 4.9 15.5 1.0
N B:SAH402 4.9 16.4 1.0
O B:SAH402 4.9 18.0 1.0

Reference:

J.M.Shaw, P.Hinchliffe, J.Spencer. Crystal Structure of A Radical Sam Methyltransferase From Sphaerobacter Thermophilus To Be Published.
Page generated: Wed Aug 6 06:25:10 2025

Last articles

Zn in 9UUO
Zn in 9UUS
Zn in 9W4R
Zn in 9VKW
Zn in 9W4S
Zn in 9VH1
Zn in 9RMX
Zn in 9RMU
Zn in 9QWN
Zn in 9U9Y
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy