Atomistry » Iron » PDB 6jsu-6kbh » 6jzu
Atomistry »
  Iron »
    PDB 6jsu-6kbh »
      6jzu »

Iron in PDB 6jzu: The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado)

Enzymatic activity of The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado)

All present enzymatic activity of The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado):
1.2.1.80; 4.1.99.5;

Protein crystallography data

The structure of The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado), PDB code: 6jzu was solved by H.M.Zhang, M.Li, Y.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.43 / 2.18
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.377, 71.313, 137.137, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 25.4

Iron Binding Sites:

The binding sites of Iron atom in the The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado) (pdb code 6jzu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado), PDB code: 6jzu:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6jzu

Go back to Iron Binding Sites List in 6jzu
Iron binding site 1 out of 2 in the The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:46.1
occ:1.00
 OE2 B:GLU32 2.3 38.8 1.0
OE1 B:GLU32 2.3 16.3 1.0
OE2 B:GLU144 2.5 46.8 1.0
OE1 B:GLU60 2.5 50.2 1.0
OE2 B:GLU60 2.6 49.3 1.0
CD B:GLU32 2.6 29.5 1.0
OE1 B:GLU144 2.7 43.1 1.0
ND1 B:HIS63 2.7 45.4 1.0
CD B:GLU60 2.9 50.9 1.0
CD B:GLU144 2.9 52.0 1.0
FE B:FE2303 3.0 54.4 1.0
O1 B:PL3301 3.3 49.4 1.0
CE1 B:HIS63 3.5 51.2 1.0
CG B:HIS63 3.6 45.0 1.0
C2 B:PL3301 3.7 33.2 1.0
CB B:HIS63 3.9 51.0 1.0
C1 B:PL3301 4.1 53.1 1.0
CG B:GLU32 4.2 36.0 1.0
CG B:GLU60 4.3 57.6 1.0
CG B:GLU144 4.5 54.8 1.0
CE1 B:HIS147 4.5 58.8 1.0
ND1 B:HIS147 4.6 55.6 1.0
NE2 B:HIS63 4.6 58.6 1.0
CA B:GLU60 4.6 55.7 1.0
CD2 B:HIS63 4.7 54.0 1.0
CB B:GLU60 4.8 54.6 1.0
OE2 B:GLU115 4.9 44.4 1.0
O B:GLU60 5.0 42.8 1.0
CB B:GLU32 5.0 45.8 1.0
C3 B:PL3301 5.0 47.4 1.0

Iron binding site 2 out of 2 in 6jzu

Go back to Iron Binding Sites List in 6jzu
Iron binding site 2 out of 2 in the The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of Acyl-Acyl Carrier Protein (Acyl-Acp) Reductase (Aar) in Complex with Aldehyde Deformylating Oxygenase (Ado) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe303

b:54.4
occ:1.00
 O1 B:PL3301 2.2 49.4 1.0
OE2 B:GLU115 2.5 44.4 1.0
OE1 B:GLU60 2.6 50.2 1.0
OE1 B:GLU144 2.7 43.1 1.0
OE2 B:GLU60 2.7 49.3 1.0
OE1 B:GLU115 2.7 48.4 1.0
CD B:GLU60 2.8 50.9 1.0
ND1 B:HIS147 2.8 55.6 1.0
CD B:GLU115 3.0 43.7 1.0
FE B:FE2302 3.0 46.1 1.0
CE1 B:HIS147 3.6 58.8 1.0
C1 B:PL3301 3.6 53.1 1.0
CD B:GLU144 3.7 52.0 1.0
CG B:HIS147 3.9 56.0 1.0
CG B:GLU60 4.0 57.6 1.0
OE2 B:GLU144 4.1 46.8 1.0
CB B:HIS147 4.2 53.4 1.0
C2 B:PL3301 4.2 33.2 1.0
CE2 B:TYR39 4.2 54.1 1.0
OH B:TYR39 4.4 44.0 1.0
OE2 B:GLU32 4.4 38.8 1.0
NE2 B:GLN110 4.5 38.7 1.0
CG B:GLU115 4.5 44.0 1.0
CB B:ALA35 4.5 43.5 1.0
CA B:GLU144 4.8 54.8 1.0
NE2 B:HIS147 4.8 65.7 1.0
CZ B:TYR39 4.8 51.2 1.0
CG B:GLU144 4.9 54.8 1.0
CB B:GLU144 4.9 49.6 1.0
CD2 B:HIS147 5.0 60.7 1.0

Reference:

Y.Gao, H.Zhang, M.Fan, C.Jia, L.Shi, X.Pan, P.Cao, X.Zhao, W.Chang, M.Li. Structural Insights Into Catalytic Mechanism and Product Delivery of Cyanobacterial Acyl-Acyl Carrier Protein Reductase Nat Commun 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-15268-Y
Page generated: Tue Aug 6 23:43:46 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy