Atomistry » Iron » PDB 6jsu-6kbh » 6k43
Atomistry »
  Iron »
    PDB 6jsu-6kbh »
      6k43 »

Iron in PDB 6k43: Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor

Enzymatic activity of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor

All present enzymatic activity of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor:
1.16.3.1;

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor (pdb code 6k43). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor, PDB code: 6k43:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 1 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:113.8
occ:1.00
OE2 A:GLU18 2.1 84.1 1.0
OE2 A:GLU51 2.1 85.8 1.0
OE1 A:GLU51 2.1 85.8 1.0
OE1 A:GLU18 2.1 84.1 1.0
OE2 A:GLU127 2.2 93.1 1.0
CD A:GLU51 2.4 85.8 1.0
CD A:GLU18 2.4 84.1 1.0
ND1 A:HIS54 2.4 86.7 1.0
CE1 A:HIS54 3.2 86.7 1.0
CD A:GLU127 3.4 93.1 1.0
CG A:HIS54 3.5 86.7 1.0
CG A:GLU51 3.8 85.8 1.0
CB A:HIS54 3.9 86.7 1.0
CG A:GLU18 3.9 84.1 1.0
OE1 A:GLU127 4.1 93.1 1.0
NE2 A:HIS54 4.4 86.7 1.0
CG A:GLU127 4.5 93.1 1.0
CD2 A:HIS54 4.5 86.7 1.0
CA A:GLU51 4.6 85.8 1.0
CB A:GLU51 4.6 85.8 1.0
CB A:GLU18 4.8 84.1 1.0
CG2 A:ILE123 5.0 87.0 1.0

Iron binding site 2 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 2 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:87.1
occ:1.00
FE A:HEM202 0.0 87.1 1.0
NC A:HEM202 2.0 87.1 1.0
NA A:HEM202 2.0 87.1 1.0
NB A:HEM202 2.0 87.1 1.0
ND A:HEM202 2.0 87.1 1.0
SD B:MET52 2.5 87.0 1.0
SD A:MET52 2.6 84.9 1.0
C1A A:HEM202 3.0 87.1 1.0
CE A:MET52 3.0 84.9 1.0
C4B A:HEM202 3.0 87.1 1.0
C4A A:HEM202 3.0 87.1 1.0
C1B A:HEM202 3.0 87.1 1.0
C1C A:HEM202 3.0 87.1 1.0
C4D A:HEM202 3.0 87.1 1.0
C4C A:HEM202 3.0 87.1 1.0
C1D A:HEM202 3.1 87.1 1.0
CE B:MET52 3.4 87.0 1.0
CHC A:HEM202 3.4 87.1 1.0
CHB A:HEM202 3.4 87.1 1.0
CHA A:HEM202 3.4 87.1 1.0
CHD A:HEM202 3.4 87.1 1.0
C2A A:HEM202 4.2 87.1 1.0
C3A A:HEM202 4.2 87.1 1.0
C2B A:HEM202 4.2 87.1 1.0
C3B A:HEM202 4.2 87.1 1.0
CG B:MET52 4.2 87.0 1.0
C2C A:HEM202 4.2 87.1 1.0
C3C A:HEM202 4.2 87.1 1.0
HHC A:HEM202 4.2 87.1 1.0
C3D A:HEM202 4.2 87.1 1.0
C2D A:HEM202 4.3 87.1 1.0
HHA A:HEM202 4.3 87.1 1.0
HHB A:HEM202 4.4 87.1 1.0
CG A:MET52 4.4 84.9 1.0
HHD A:HEM202 4.4 87.1 1.0

Iron binding site 3 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 3 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe200

b:114.9
occ:1.00
OE1 B:GLU18 2.1 85.0 1.0
OE2 B:GLU51 2.1 88.2 1.0
OE1 B:GLU51 2.1 88.2 1.0
OE2 B:GLU18 2.1 85.0 1.0
OE1 B:GLU127 2.2 91.5 1.0
CD B:GLU51 2.3 88.2 1.0
CD B:GLU18 2.4 85.0 1.0
ND1 B:HIS54 2.4 87.8 1.0
CE1 B:HIS54 3.2 87.8 1.0
CD B:GLU127 3.4 91.5 1.0
CG B:HIS54 3.5 87.8 1.0
CG B:GLU51 3.8 88.2 1.0
CB B:HIS54 3.9 87.8 1.0
CG B:GLU18 3.9 85.0 1.0
OE2 B:GLU127 4.1 91.5 1.0
NE2 B:HIS54 4.4 87.8 1.0
CG B:GLU127 4.4 91.5 1.0
CA B:GLU51 4.5 88.2 1.0
CD2 B:HIS54 4.5 87.8 1.0
CB B:GLU51 4.6 88.2 1.0
CB B:GLU18 4.8 85.0 1.0
CG2 B:ILE123 5.0 85.7 1.0

Iron binding site 4 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 4 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:114.1
occ:1.00
OE2 C:GLU51 2.1 88.6 1.0
OE1 C:GLU51 2.1 88.6 1.0
OE2 C:GLU18 2.1 86.1 1.0
OE1 C:GLU18 2.3 86.1 1.0
OE2 C:GLU127 2.3 94.0 1.0
OE1 C:GLU127 2.3 94.0 1.0
CD C:GLU51 2.3 88.6 1.0
CD C:GLU127 2.4 94.0 1.0
CD C:GLU18 2.5 86.1 1.0
ND1 C:HIS54 2.6 88.3 1.0
CE1 C:HIS54 3.2 88.3 1.0
CG C:GLU127 3.7 94.0 1.0
CG C:HIS54 3.8 88.3 1.0
CG C:GLU51 3.8 88.6 1.0
CG C:GLU18 4.0 86.1 1.0
CB C:HIS54 4.3 88.3 1.0
NE2 C:HIS54 4.4 88.3 1.0
CB C:GLU51 4.7 88.6 1.0
CD2 C:HIS54 4.8 88.3 1.0
CA C:GLU51 4.8 88.6 1.0
CB C:GLU18 4.9 86.1 1.0
CG2 C:ILE123 4.9 88.4 1.0

Iron binding site 5 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 5 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:90.2
occ:1.00
FE C:HEM202 0.0 90.2 1.0
NB C:HEM202 2.0 90.2 1.0
NA C:HEM202 2.0 90.2 1.0
ND C:HEM202 2.0 90.2 1.0
NC C:HEM202 2.1 90.2 1.0
CE C:MET52 2.1 87.9 1.0
SD C:MET52 2.8 87.9 1.0
C1C C:HEM202 2.9 90.2 1.0
C1A C:HEM202 3.0 90.2 1.0
C4C C:HEM202 3.0 90.2 1.0
C4B C:HEM202 3.0 90.2 1.0
C4A C:HEM202 3.0 90.2 1.0
C4D C:HEM202 3.0 90.2 1.0
C1B C:HEM202 3.1 90.2 1.0
C1D C:HEM202 3.1 90.2 1.0
CHC C:HEM202 3.3 90.2 1.0
CHA C:HEM202 3.4 90.2 1.0
CHD C:HEM202 3.4 90.2 1.0
CHB C:HEM202 3.5 90.2 1.0
SD D:MET52 3.5 85.0 1.0
CE D:MET52 4.1 85.0 1.0
C2C C:HEM202 4.1 90.2 1.0
C3C C:HEM202 4.1 90.2 1.0
HHD C:HEM202 4.2 90.2 1.0
C2A C:HEM202 4.2 90.2 1.0
C3A C:HEM202 4.2 90.2 1.0
C3B C:HEM202 4.2 90.2 1.0
C2B C:HEM202 4.2 90.2 1.0
C3D C:HEM202 4.3 90.2 1.0
C2D C:HEM202 4.3 90.2 1.0
HHC C:HEM202 4.3 90.2 1.0
HHA C:HEM202 4.3 90.2 1.0
HHB C:HEM202 4.4 90.2 1.0
CG C:MET52 4.5 87.9 1.0
CG D:MET52 5.0 85.0 1.0

Iron binding site 6 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 6 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:111.6
occ:1.00
OE2 D:GLU18 2.1 84.7 1.0
OE2 D:GLU51 2.1 87.4 1.0
OE1 D:GLU51 2.1 87.4 1.0
OE1 D:GLU18 2.1 84.7 1.0
OE2 D:GLU127 2.2 90.8 1.0
CD D:GLU51 2.3 87.4 1.0
CD D:GLU18 2.4 84.7 1.0
ND1 D:HIS54 2.4 86.8 1.0
CE1 D:HIS54 3.2 86.8 1.0
CD D:GLU127 3.4 90.8 1.0
CG D:HIS54 3.5 86.8 1.0
CG D:GLU51 3.8 87.4 1.0
CB D:HIS54 3.9 86.8 1.0
CG D:GLU18 3.9 84.7 1.0
OE1 D:GLU127 4.1 90.8 1.0
NE2 D:HIS54 4.4 86.8 1.0
CG D:GLU127 4.5 90.8 1.0
CD2 D:HIS54 4.5 86.8 1.0
CA D:GLU51 4.6 87.4 1.0
CB D:GLU51 4.6 87.4 1.0
CB D:GLU18 4.8 84.7 1.0
CG2 D:ILE123 5.0 85.1 1.0

Iron binding site 7 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 7 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:112.6
occ:1.00
OE1 F:GLU51 2.1 87.4 1.0
OE2 F:GLU18 2.1 83.6 1.0
OE2 F:GLU51 2.1 87.4 1.0
OE1 F:GLU18 2.1 83.6 1.0
OE2 F:GLU127 2.2 92.9 1.0
CD F:GLU51 2.3 87.4 1.0
CD F:GLU18 2.4 83.6 1.0
ND1 F:HIS54 2.4 87.5 1.0
CE1 F:HIS54 3.2 87.5 1.0
CD F:GLU127 3.4 92.9 1.0
CG F:HIS54 3.5 87.5 1.0
CG F:GLU51 3.8 87.4 1.0
CG F:GLU18 3.9 83.6 1.0
CB F:HIS54 3.9 87.5 1.0
OE1 F:GLU127 4.1 92.9 1.0
NE2 F:HIS54 4.4 87.5 1.0
CG F:GLU127 4.5 92.9 1.0
CD2 F:HIS54 4.6 87.5 1.0
CA F:GLU51 4.6 87.4 1.0
CB F:GLU51 4.6 87.4 1.0
CB F:GLU18 4.8 83.6 1.0
CG2 F:ILE123 5.0 86.9 1.0

Iron binding site 8 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 8 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe202

b:87.4
occ:1.00
FE F:HEM202 0.0 87.4 1.0
ND F:HEM202 2.0 87.4 1.0
NB F:HEM202 2.0 87.4 1.0
NC F:HEM202 2.0 87.4 1.0
NA F:HEM202 2.0 87.4 1.0
CE F:MET52 2.7 86.0 1.0
SD F:MET52 2.8 86.0 1.0
SD E:MET52 2.9 84.0 1.0
CE E:MET52 2.9 84.0 1.0
C1D F:HEM202 3.0 87.4 1.0
C4D F:HEM202 3.0 87.4 1.0
C1B F:HEM202 3.0 87.4 1.0
C4A F:HEM202 3.0 87.4 1.0
C4C F:HEM202 3.0 87.4 1.0
C4B F:HEM202 3.0 87.4 1.0
C1C F:HEM202 3.1 87.4 1.0
C1A F:HEM202 3.1 87.4 1.0
CHD F:HEM202 3.4 87.4 1.0
CHB F:HEM202 3.4 87.4 1.0
CHA F:HEM202 3.4 87.4 1.0
CHC F:HEM202 3.4 87.4 1.0
CG F:MET52 4.0 86.0 1.0
C2D F:HEM202 4.1 87.4 1.0
C3D F:HEM202 4.2 87.4 1.0
CG E:MET52 4.2 84.0 1.0
C3A F:HEM202 4.2 87.4 1.0
C2B F:HEM202 4.2 87.4 1.0
C3B F:HEM202 4.2 87.4 1.0
C3C F:HEM202 4.2 87.4 1.0
C2A F:HEM202 4.3 87.4 1.0
C2C F:HEM202 4.3 87.4 1.0
HHD F:HEM202 4.3 87.4 1.0
HHB F:HEM202 4.4 87.4 1.0
HHA F:HEM202 4.4 87.4 1.0
HHC F:HEM202 4.4 87.4 1.0

Iron binding site 9 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 9 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:113.2
occ:1.00
OE2 E:GLU18 2.1 84.7 1.0
OE2 E:GLU51 2.1 85.9 1.0
OE1 E:GLU51 2.1 85.9 1.0
OE1 E:GLU18 2.1 84.7 1.0
OE2 E:GLU127 2.2 90.4 1.0
CD E:GLU51 2.3 85.9 1.0
ND1 E:HIS54 2.4 86.0 1.0
CD E:GLU18 2.4 84.7 1.0
CE1 E:HIS54 3.2 86.0 1.0
CD E:GLU127 3.4 90.4 1.0
CG E:HIS54 3.5 86.0 1.0
CG E:GLU51 3.8 85.9 1.0
CB E:HIS54 3.9 86.0 1.0
CG E:GLU18 3.9 84.7 1.0
OE1 E:GLU127 4.1 90.4 1.0
NE2 E:HIS54 4.4 86.0 1.0
CG E:GLU127 4.4 90.4 1.0
CD2 E:HIS54 4.5 86.0 1.0
CA E:GLU51 4.6 85.9 1.0
CB E:GLU51 4.6 85.9 1.0
CB E:GLU18 4.8 84.7 1.0
CG2 E:ILE123 5.0 85.6 1.0

Iron binding site 10 out of 36 in 6k43

Go back to Iron Binding Sites List in 6k43
Iron binding site 10 out of 36 in the Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Holo-Bacterioferritin-Form-I From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:111.4
occ:1.00
OE2 G:GLU18 2.1 84.0 1.0
OE2 G:GLU51 2.1 86.1 1.0
OE1 G:GLU51 2.1 86.1 1.0
OE1 G:GLU18 2.1 84.0 1.0
OE2 G:GLU127 2.2 90.1 1.0
CD G:GLU51 2.3 86.1 1.0
CD G:GLU18 2.4 84.0 1.0
ND1 G:HIS54 2.4 84.6 1.0
CE1 G:HIS54 3.2 84.6 1.0
CD G:GLU127 3.4 90.1 1.0
CG G:HIS54 3.5 84.6 1.0
CG G:GLU51 3.8 86.1 1.0
CB G:HIS54 3.9 84.6 1.0
CG G:GLU18 3.9 84.0 1.0
OE1 G:GLU127 4.1 90.1 1.0
NE2 G:HIS54 4.4 84.6 1.0
CG G:GLU127 4.5 90.1 1.0
CD2 G:HIS54 4.5 84.6 1.0
CA G:GLU51 4.6 86.1 1.0
CB G:GLU51 4.6 86.1 1.0
CB G:GLU18 4.8 84.0 1.0
CG2 G:ILE123 5.0 85.1 1.0

Reference:

C.Jobichen, J.Sivaraman. Cryo-Em Structure of Apo-Bacterioferritin From Streptomyces Coelicolor To Be Published.
Page generated: Tue Aug 6 23:45:08 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy