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Iron in PDB 6kh3: Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes

Enzymatic activity of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes

All present enzymatic activity of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes:
1.16.3.1;

Protein crystallography data

The structure of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes, PDB code: 6kh3 was solved by C.Gu, H.Chen, Y.Wang, T.Zhang, H.Wang, G.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.65 / 2.30
Space group P 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 118.941, 118.941, 118.941, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 20.5

Other elements in 6kh3:

The structure of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes (pdb code 6kh3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes, PDB code: 6kh3:

Iron binding site 1 out of 1 in 6kh3

Go back to Iron Binding Sites List in 6kh3
Iron binding site 1 out of 1 in the Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:44.6
occ:1.00
 OE1 A:GLU60 2.0 58.2 1.0
O A:HOH302 2.2 36.9 1.0
OE1 A:GLU24 2.2 34.6 1.0
O A:HOH315 2.2 38.8 1.0
OE2 A:GLU60 2.3 41.8 1.0
ND1 A:HIS63 2.4 48.8 1.0
CD A:GLU60 2.5 35.0 1.0
CD A:GLU24 3.0 30.8 1.0
CG A:HIS63 3.2 40.0 1.0
HB3 A:HIS63 3.2 34.1 1.0
OE2 A:GLU24 3.2 32.2 1.0
CE1 A:HIS63 3.3 67.0 1.0
HB2 A:HIS63 3.4 34.1 1.0
CB A:HIS63 3.5 28.4 1.0
HE1 A:HIS63 3.5 80.4 1.0
HG11 A:VAL109 3.7 38.0 1.0
HA A:GLU60 3.7 38.2 1.0
CG A:GLU60 4.0 28.2 1.0
OE1 A:GLN140 4.0 31.1 1.0
O A:HOH317 4.1 35.6 1.0
HD1 A:TYR136 4.1 33.1 1.0
CD2 A:HIS63 4.2 60.7 1.0
NE2 A:HIS63 4.2 82.9 1.0
HG2 A:GLU60 4.4 33.9 1.0
HE1 A:TYR136 4.4 36.9 1.0
CG A:GLU24 4.4 29.1 1.0
HG3 A:GLU60 4.4 33.9 1.0
HB3 A:GLU24 4.5 34.1 1.0
HE22 A:GLN140 4.5 34.0 1.0
CG1 A:VAL109 4.6 31.6 1.0
CA A:GLU60 4.6 31.8 1.0
HG12 A:VAL109 4.6 38.0 1.0
HG3 A:GLU24 4.7 35.0 1.0
HA A:GLU24 4.7 41.9 1.0
CB A:GLU60 4.7 26.3 1.0
HB3 A:GLU60 4.8 31.5 1.0
CD1 A:TYR136 4.9 27.6 1.0
HD11 A:LEU113 4.9 36.8 1.0
CB A:GLU24 4.9 28.4 1.0
CD A:GLN140 4.9 25.5 1.0
HG13 A:VAL109 5.0 38.0 1.0
HE2 A:HIS63 5.0 99.5 1.0

Reference:

C.Gu, H.Chen, Y.Wang, T.Zhang, H.Wang, G.Zhao. Structural Insight Into Binary Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes. Chemistry 2019.
ISSN: ISSN 0947-6539
PubMed: 31820500
DOI: 10.1002/CHEM.201905315
Page generated: Wed Aug 6 09:00:38 2025

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