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Iron in PDB 6ky7: Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution

Protein crystallography data

The structure of Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution, PDB code: 6ky7 was solved by P.K.Singh, V.Viswanathan, P.Sharma, C.Rani, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.79 / 2.27
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.080, 80.640, 76.130, 90.00, 102.80, 90.00
R / Rfree (%) 19.6 / 26.6

Other elements in 6ky7:

The structure of Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution also contains other interesting chemical elements:

Iodine (I) 13 atoms
Calcium (Ca) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution (pdb code 6ky7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution, PDB code: 6ky7:

Iron binding site 1 out of 1 in 6ky7

Go back to Iron Binding Sites List in 6ky7
Iron binding site 1 out of 1 in the Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe606

b:37.0
occ:1.00
FE A:HEM606 0.0 37.0 1.0
O2 A:PEO628 1.9 42.2 1.0
ND A:HEM606 1.9 37.8 1.0
NA A:HEM606 2.0 41.4 1.0
NC A:HEM606 2.1 35.1 1.0
NB A:HEM606 2.1 38.2 1.0
NE2 A:HIS351 2.1 32.3 1.0
O1 A:PEO628 2.7 60.6 1.0
C4D A:HEM606 2.9 36.2 1.0
C1D A:HEM606 2.9 35.5 1.0
C4C A:HEM606 3.0 35.6 1.0
C1A A:HEM606 3.0 39.9 1.0
CD2 A:HIS351 3.0 29.4 1.0
C4B A:HEM606 3.1 37.8 1.0
C4A A:HEM606 3.1 41.6 1.0
C1C A:HEM606 3.1 36.9 1.0
C1B A:HEM606 3.1 37.9 1.0
CE1 A:HIS351 3.2 29.9 1.0
CHD A:HEM606 3.4 38.5 1.0
CHA A:HEM606 3.4 39.8 1.0
CHC A:HEM606 3.5 35.2 1.0
CHB A:HEM606 3.5 39.1 1.0
C3D A:HEM606 4.2 36.7 1.0
C2D A:HEM606 4.2 35.2 1.0
CG A:HIS351 4.2 31.9 1.0
C3C A:HEM606 4.2 38.9 1.0
C2A A:HEM606 4.3 39.7 1.0
C3A A:HEM606 4.3 39.1 1.0
ND1 A:HIS351 4.3 32.2 1.0
C2C A:HEM606 4.3 38.6 1.0
C2B A:HEM606 4.3 37.3 1.0
C3B A:HEM606 4.4 38.6 1.0
NE2 A:GLN105 4.6 29.9 1.0
CD2 A:LEU433 4.6 34.6 1.0

Reference:

P.K.Singh, V.Viswanathan, P.Sharma, C.Rani, S.Sharma, T.P.Singh. Crystal Structure of Yak Lactoperoxidase at 2.27 A Resolution To Be Published.
Page generated: Wed Aug 7 00:27:22 2024

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