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Iron in PDB 6l2j: Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution.

Enzymatic activity of Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution.

All present enzymatic activity of Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution.:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution., PDB code: 6l2j was solved by V.Viswanathan, P.Sharma, C.Rani, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.84 / 1.93
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.850, 78.920, 67.750, 90.00, 92.95, 90.00
R / Rfree (%) 14.5 / 19.8

Other elements in 6l2j:

The structure of Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution. also contains other interesting chemical elements:

Iodine (I) 26 atoms
Calcium (Ca) 5 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution. (pdb code 6l2j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution., PDB code: 6l2j:

Iron binding site 1 out of 1 in 6l2j

Go back to Iron Binding Sites List in 6l2j
Iron binding site 1 out of 1 in the Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:9.8
occ:1.00
FE A:HEM601 0.0 9.8 1.0
O2 A:PEO648 1.8 22.4 1.0
ND A:HEM601 2.0 9.1 1.0
NE2 A:HIS351 2.0 10.2 1.0
NA A:HEM601 2.0 9.2 1.0
NC A:HEM601 2.1 9.0 1.0
NB A:HEM601 2.1 8.8 1.0
C4D A:HEM601 3.0 9.4 1.0
CD2 A:HIS351 3.0 10.5 1.0
C1D A:HEM601 3.0 8.9 1.0
C4B A:HEM601 3.0 8.9 1.0
CE1 A:HIS351 3.0 10.2 1.0
C4C A:HEM601 3.1 8.9 1.0
C1A A:HEM601 3.1 9.7 1.0
C1B A:HEM601 3.1 9.3 1.0
C1C A:HEM601 3.1 8.9 1.0
C4A A:HEM601 3.1 10.0 1.0
O1 A:PEO648 3.2 24.5 1.0
CHD A:HEM601 3.4 9.2 1.0
CHC A:HEM601 3.4 8.3 1.0
CHA A:HEM601 3.4 9.6 1.0
CHB A:HEM601 3.5 9.2 1.0
CG A:HIS351 4.1 9.8 1.0
ND1 A:HIS351 4.1 10.3 1.0
O A:HOH765 4.2 20.6 0.5
C3D A:HEM601 4.2 9.1 1.0
C2D A:HEM601 4.2 8.9 1.0
C3C A:HEM601 4.3 8.7 1.0
C2C A:HEM601 4.3 8.2 1.0
C3B A:HEM601 4.3 9.6 1.0
C2A A:HEM601 4.3 10.0 1.0
C2B A:HEM601 4.3 9.4 1.0
C3A A:HEM601 4.3 9.7 1.0
NE2 A:GLN105 4.4 8.3 1.0
O A:OSM644 4.7 11.4 0.3
CD2 A:LEU433 4.7 10.3 1.0
I A:IOD620 5.0 12.7 0.4

Reference:

V.Viswanathan, P.Sharma, C.Rani, S.Sharma, T.P.Singh. Crystal Structure of Yak Lactoperoxidase at 1.93 A Resolution. To Be Published.
Page generated: Sun Aug 11 11:53:20 2024

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