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Iron in PDB 6l55: Recombinant Tegillarca Granosa Ferritin

Enzymatic activity of Recombinant Tegillarca Granosa Ferritin

All present enzymatic activity of Recombinant Tegillarca Granosa Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Recombinant Tegillarca Granosa Ferritin, PDB code: 6l55 was solved by Q.Q.Jiang, X.R.Su, T.H.Ming, H.S.Huan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.04 / 1.78
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 214.623, 214.905, 151.902, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 23.1

Other elements in 6l55:

The structure of Recombinant Tegillarca Granosa Ferritin also contains other interesting chemical elements:

Sodium (Na) 11 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Recombinant Tegillarca Granosa Ferritin (pdb code 6l55). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Recombinant Tegillarca Granosa Ferritin, PDB code: 6l55:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 6l55

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Iron binding site 1 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:13.6
occ:1.00
 OE1 A:GLU25 2.0 11.7 1.0
O A:HOH340 2.1 13.8 1.0
ND1 A:HIS63 2.2 10.3 1.0
O A:HOH363 2.2 13.0 1.0
OE1 A:GLU60 2.2 12.0 1.0
CD A:GLU25 3.0 12.2 1.0
CD A:GLU60 3.1 17.3 1.0
CE1 A:HIS63 3.1 11.6 1.0
CG A:HIS63 3.2 10.1 1.0
OE2 A:GLU25 3.3 13.4 1.0
OE2 A:GLU60 3.4 15.3 1.0
CB A:HIS63 3.5 5.4 1.0
OE1 A:GLN139 4.1 12.2 1.0
O A:HOH373 4.1 12.7 1.0
CG1 A:VAL108 4.2 4.6 1.0
NE2 A:HIS63 4.2 15.6 1.0
CD2 A:HIS63 4.3 14.9 1.0
CG A:GLU25 4.3 6.2 1.0
CG A:GLU60 4.4 8.0 1.0
CA A:GLU60 4.5 6.3 1.0
CB A:GLU60 4.6 4.6 1.0
O A:HOH375 4.7 15.2 1.0
CB A:GLU25 4.7 8.5 1.0
O A:HOH301 4.8 14.7 1.0
O A:GLU60 4.9 6.4 1.0
CD A:GLN139 4.9 12.4 1.0

Iron binding site 2 out of 16 in 6l55

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Iron binding site 2 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:14.9
occ:1.00
 OE1 B:GLU25 2.0 9.8 1.0
OE1 B:GLU60 2.1 14.6 1.0
O B:HOH309 2.2 13.2 1.0
ND1 B:HIS63 2.2 15.7 1.0
O B:HOH308 2.3 16.2 1.0
CD B:GLU60 2.8 19.1 1.0
CD B:GLU25 3.0 12.5 1.0
OE2 B:GLU60 3.0 21.8 1.0
CE1 B:HIS63 3.2 15.4 1.0
CG B:HIS63 3.2 10.6 1.0
OE2 B:GLU25 3.3 12.7 1.0
CB B:HIS63 3.5 7.6 1.0
O B:HOH355 3.8 16.9 1.0
OE1 B:GLN139 4.0 11.6 1.0
CG1 B:VAL108 4.2 9.1 1.0
CG B:GLU60 4.2 11.2 1.0
NE2 B:HIS63 4.3 15.4 1.0
CG B:GLU25 4.3 6.5 1.0
CD2 B:HIS63 4.4 11.1 1.0
CA B:GLU60 4.4 4.2 1.0
O B:HOH420 4.4 17.9 1.0
CB B:GLU60 4.6 7.3 1.0
O B:HOH301 4.6 20.0 1.0
CB B:GLU25 4.7 4.8 1.0
O B:GLU60 4.9 4.4 1.0
CD B:GLN139 4.9 9.5 1.0

Iron binding site 3 out of 16 in 6l55

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Iron binding site 3 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:23.9
occ:1.00
 OE1 B:GLU132 2.6 11.7 1.0
O B:HOH302 2.6 24.1 1.0
O B:HOH328 2.9 11.3 1.0
CD B:GLU132 3.6 11.2 1.0
OE2 B:GLU132 4.0 7.3 1.0
OD1 B:ASP129 4.0 11.4 1.0
O B:HOH386 4.7 10.9 1.0
CG B:ASP129 4.8 7.7 1.0
CB B:ASP129 4.8 8.4 1.0
CA B:ASP129 4.9 7.7 1.0
CG B:GLU132 5.0 3.8 1.0

Iron binding site 4 out of 16 in 6l55

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Iron binding site 4 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:13.8
occ:1.00
 OE1 C:GLU25 2.0 11.2 1.0
O C:HOH323 2.1 10.4 1.0
ND1 C:HIS63 2.2 15.0 1.0
OE1 C:GLU60 2.2 13.8 1.0
O C:HOH326 2.3 10.9 1.0
CD C:GLU25 3.0 9.4 1.0
CD C:GLU60 3.1 14.8 1.0
CG C:HIS63 3.2 9.3 1.0
CE1 C:HIS63 3.2 13.7 1.0
OE2 C:GLU60 3.3 18.7 1.0
OE2 C:GLU25 3.4 12.6 1.0
CB C:HIS63 3.4 5.8 1.0
O C:HOH337 4.0 14.4 1.0
OE1 C:GLN139 4.2 11.4 1.0
CG1 C:VAL108 4.2 5.8 1.0
NE2 C:HIS63 4.3 17.8 1.0
CD2 C:HIS63 4.3 14.4 1.0
CG C:GLU25 4.4 7.4 1.0
CG C:GLU60 4.4 9.2 1.0
CA C:GLU60 4.4 4.7 1.0
CB C:GLU60 4.6 6.2 1.0
O C:HOH391 4.6 15.9 1.0
O C:HOH301 4.6 15.3 1.0
CB C:GLU25 4.7 8.0 1.0
O C:GLU60 4.9 4.9 1.0
CA C:HIS63 5.0 8.8 1.0

Iron binding site 5 out of 16 in 6l55

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Iron binding site 5 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:15.0
occ:1.00
 OE1 D:GLU60 2.0 15.1 1.0
OE1 D:GLU25 2.0 12.9 1.0
O D:HOH331 2.2 14.4 1.0
ND1 D:HIS63 2.2 13.5 1.0
O D:HOH305 2.4 22.3 1.0
CD D:GLU60 2.9 22.4 1.0
CD D:GLU25 3.0 13.5 1.0
OE2 D:GLU60 3.1 27.1 1.0
CE1 D:HIS63 3.2 18.2 1.0
CG D:HIS63 3.3 13.1 1.0
OE2 D:GLU25 3.3 14.4 1.0
CB D:HIS63 3.6 7.1 1.0
O D:HOH426 4.0 13.2 1.0
OE1 D:GLN139 4.1 14.0 1.0
CG1 D:VAL108 4.2 7.8 1.0
CG D:GLU60 4.2 10.4 1.0
NE2 D:HIS63 4.3 14.8 1.0
CG D:GLU25 4.3 7.7 1.0
O D:HOH430 4.4 22.1 1.0
CD2 D:HIS63 4.4 15.9 1.0
CA D:GLU60 4.4 7.7 1.0
CB D:GLU60 4.6 8.2 1.0
CB D:GLU25 4.6 5.9 1.0
O D:HOH421 4.8 20.9 1.0
CD D:GLN139 4.8 12.1 1.0
O D:GLU60 4.9 6.9 1.0
O D:HOH302 4.9 20.6 1.0

Iron binding site 6 out of 16 in 6l55

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Iron binding site 6 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe202

b:26.8
occ:1.00
 O D:HOH301 2.6 29.4 1.0
OE1 D:GLU132 2.6 9.9 1.0
OE1 H:GLU132 2.7 9.5 1.0
O H:HOH337 2.8 12.7 1.0
O D:HOH329 3.1 11.1 1.0
CD D:GLU132 3.6 9.8 1.0
CD H:GLU132 3.8 13.1 1.0
OD1 H:ASP129 3.8 16.6 1.0
OD1 D:ASP129 3.8 11.9 1.0
OE2 D:GLU132 4.0 9.1 1.0
OE2 H:GLU132 4.1 14.1 1.0
CG D:ASP129 4.6 11.2 1.0
CG H:ASP129 4.7 11.1 1.0
CB H:ASP129 4.8 7.5 1.0
CB D:ASP129 4.8 5.7 1.0
CA D:ASP129 4.8 8.8 1.0
CA H:ASP129 4.8 9.0 1.0
O D:HOH332 4.9 14.4 1.0
O H:HOH327 4.9 11.7 1.0
CG D:GLU132 4.9 9.0 1.0

Iron binding site 7 out of 16 in 6l55

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Iron binding site 7 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:15.3
occ:1.00
 OE1 E:GLU25 2.0 13.1 1.0
OE1 E:GLU60 2.0 14.3 1.0
O E:HOH323 2.2 12.8 1.0
ND1 E:HIS63 2.3 12.8 1.0
O E:HOH308 2.3 20.0 1.0
CD E:GLU60 2.9 20.5 1.0
CD E:GLU25 3.0 13.2 1.0
OE2 E:GLU60 3.1 26.5 1.0
CE1 E:HIS63 3.2 13.5 1.0
CG E:HIS63 3.3 15.2 1.0
OE2 E:GLU25 3.3 11.4 1.0
CB E:HIS63 3.6 9.3 1.0
O E:HOH392 3.9 12.8 1.0
OE1 E:GLN139 4.0 12.4 1.0
CG1 E:VAL108 4.2 7.0 1.0
O E:HOH427 4.2 22.5 1.0
CG E:GLU60 4.3 8.9 1.0
CG E:GLU25 4.3 7.6 1.0
NE2 E:HIS63 4.4 17.4 1.0
CD2 E:HIS63 4.4 10.7 1.0
CA E:GLU60 4.5 6.8 1.0
CB E:GLU60 4.6 7.6 1.0
CB E:GLU25 4.7 4.8 1.0
CD E:GLN139 4.8 15.0 1.0
O E:HOH305 4.8 20.7 1.0
O E:GLU60 4.9 6.6 1.0

Iron binding site 8 out of 16 in 6l55

Go back to Iron Binding Sites List in 6l55
Iron binding site 8 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:13.5
occ:1.00
 OE1 F:GLU25 2.0 8.4 1.0
ND1 F:HIS63 2.1 16.6 1.0
O F:HOH326 2.1 10.7 1.0
OE1 F:GLU60 2.2 12.7 1.0
O F:HOH321 2.3 14.1 1.0
CD F:GLU25 3.0 10.0 1.0
CD F:GLU60 3.0 12.3 1.0
CE1 F:HIS63 3.1 15.7 1.0
CG F:HIS63 3.1 9.1 1.0
OE2 F:GLU60 3.3 15.4 1.0
OE2 F:GLU25 3.3 12.3 1.0
CB F:HIS63 3.4 4.7 1.0
O F:HOH319 4.0 15.4 1.0
CG1 F:VAL108 4.2 6.7 1.0
NE2 F:HIS63 4.2 15.8 1.0
OE1 F:GLN139 4.2 12.5 1.0
CD2 F:HIS63 4.2 17.8 1.0
CG F:GLU60 4.3 10.4 1.0
CG F:GLU25 4.4 6.9 1.0
CA F:GLU60 4.4 5.6 1.0
CB F:GLU60 4.6 5.3 1.0
O F:HOH365 4.6 13.9 1.0
CB F:GLU25 4.7 8.5 1.0
O F:HOH301 4.7 15.4 1.0
O F:GLU60 4.9 4.8 1.0
CA F:HIS63 5.0 6.8 1.0

Iron binding site 9 out of 16 in 6l55

Go back to Iron Binding Sites List in 6l55
Iron binding site 9 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe202

b:24.3
occ:1.00
 OE1 F:GLU132 2.8 13.0 1.0
O F:HOH354 2.8 8.2 1.0
O F:HOH302 2.9 23.5 1.0
CD F:GLU132 3.8 10.1 1.0
OD1 F:ASP129 4.0 13.4 1.0
OE2 F:GLU132 4.2 6.6 1.0
O F:HOH311 4.8 9.8 1.0
CG F:ASP129 4.8 11.8 1.0
CB F:ASP129 4.8 5.4 1.0
CA F:ASP129 4.9 5.2 1.0

Iron binding site 10 out of 16 in 6l55

Go back to Iron Binding Sites List in 6l55
Iron binding site 10 out of 16 in the Recombinant Tegillarca Granosa Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Recombinant Tegillarca Granosa Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:15.1
occ:1.00
 OE1 G:GLU25 2.0 11.3 1.0
OE1 G:GLU60 2.1 13.6 1.0
O G:HOH326 2.2 11.8 1.0
ND1 G:HIS63 2.3 13.5 1.0
O G:HOH318 2.3 14.5 1.0
CD G:GLU60 3.0 21.5 1.0
CD G:GLU25 3.0 10.6 1.0
CE1 G:HIS63 3.2 15.1 1.0
CG G:HIS63 3.2 8.4 1.0
OE2 G:GLU60 3.3 23.5 1.0
OE2 G:GLU25 3.4 12.3 1.0
CB G:HIS63 3.5 7.3 1.0
O G:HOH437 4.1 14.2 1.0
CG1 G:VAL108 4.2 5.5 1.0
OE1 G:GLN139 4.3 8.8 1.0
CG G:GLU60 4.3 10.4 1.0
NE2 G:HIS63 4.3 16.7 1.0
CD2 G:HIS63 4.4 11.7 1.0
CG G:GLU25 4.4 5.6 1.0
CA G:GLU60 4.5 3.5 1.0
CB G:GLU60 4.6 5.3 1.0
O G:HOH409 4.7 19.5 1.0
CB G:GLU25 4.8 7.0 1.0
O G:HOH302 4.8 18.2 1.0
O G:GLU60 4.9 4.3 1.0
CD G:GLN139 5.0 12.3 1.0

Reference:

Q.Q.Jian, X.R.Su, T.H.Ming, H.S.Huan. Crystal Structure Analysis Unravels How CU2+ in CU2+-Ferritin Nanocage Perturb the Functions of Tegillarca Granosa Ferritin To Be Published.
Page generated: Wed Aug 7 00:39:58 2024

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