Atomistry » Iron » PDB 6ll1-6m54 » 6lqw
Atomistry »
  Iron »
    PDB 6ll1-6m54 »
      6lqw »

Iron in PDB 6lqw: Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.

Protein crystallography data

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw was solved by V.Viswanathan, S.N.Pandey, N.Ahmad, C.Rani, P.Sharma, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.64 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.295, 96.732, 83.931, 90.00, 90.30, 90.00
R / Rfree (%) 21.2 / 29.2

Other elements in 6lqw:

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. (pdb code 6lqw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6lqw

Go back to Iron Binding Sites List in 6lqw
Iron binding site 1 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:20.3
occ:1.00
FE A:HEM603 0.0 20.3 1.0
NC A:HEM603 1.9 15.0 1.0
ND A:HEM603 2.0 16.7 1.0
NB A:HEM603 2.0 14.0 1.0
NA A:HEM603 2.1 13.6 1.0
NE2 A:HIS351 2.3 15.8 1.0
O2 A:PEO604 2.8 16.3 1.0
C1C A:HEM603 3.0 15.8 1.0
C4C A:HEM603 3.0 15.4 1.0
C1D A:HEM603 3.0 19.5 1.0
C4B A:HEM603 3.0 14.6 1.0
C4D A:HEM603 3.1 17.8 1.0
C1A A:HEM603 3.1 16.4 1.0
C4A A:HEM603 3.1 17.4 1.0
C1B A:HEM603 3.1 15.9 1.0
O1 A:PEO604 3.1 20.9 1.0
CD2 A:HIS351 3.2 20.8 1.0
CE1 A:HIS351 3.3 19.3 1.0
CHC A:HEM603 3.3 14.9 1.0
CHD A:HEM603 3.4 16.0 1.0
CHA A:HEM603 3.5 18.4 1.0
CHB A:HEM603 3.5 15.4 1.0
C2C A:HEM603 4.2 19.6 1.0
C3C A:HEM603 4.2 14.3 1.0
NE2 A:GLN105 4.2 17.6 1.0
C2D A:HEM603 4.2 19.5 1.0
C3B A:HEM603 4.3 13.9 1.0
C3D A:HEM603 4.3 22.5 1.0
C2B A:HEM603 4.3 16.8 1.0
C2A A:HEM603 4.3 19.1 1.0
C3A A:HEM603 4.3 22.6 1.0
CG A:HIS351 4.4 22.0 1.0
ND1 A:HIS351 4.4 21.7 1.0
CD2 A:LEU433 4.8 17.9 1.0

Iron binding site 2 out of 2 in 6lqw

Go back to Iron Binding Sites List in 6lqw
Iron binding site 2 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe605

b:16.1
occ:1.00
FE B:HEM605 0.0 16.1 1.0
ND B:HEM605 2.0 13.4 1.0
NA B:HEM605 2.0 14.1 1.0
NB B:HEM605 2.1 16.9 1.0
NC B:HEM605 2.1 11.8 1.0
NE2 B:HIS351 2.4 15.9 1.0
O2 B:PEO606 2.9 20.1 1.0
C1D B:HEM605 3.0 14.1 1.0
C4D B:HEM605 3.0 18.3 1.0
C4C B:HEM605 3.1 16.1 1.0
C1A B:HEM605 3.1 13.8 1.0
C4A B:HEM605 3.1 15.6 1.0
C4B B:HEM605 3.1 17.3 1.0
C1B B:HEM605 3.1 18.7 1.0
C1C B:HEM605 3.1 12.5 1.0
CD2 B:HIS351 3.3 14.8 1.0
CHD B:HEM605 3.4 16.4 1.0
CHA B:HEM605 3.4 15.3 1.0
CHB B:HEM605 3.4 16.1 1.0
CHC B:HEM605 3.5 14.2 1.0
CE1 B:HIS351 3.5 17.0 1.0
O1 B:PEO606 3.7 31.1 1.0
C2D B:HEM605 4.3 17.7 1.0
C3D B:HEM605 4.3 19.0 1.0
C2A B:HEM605 4.3 14.8 1.0
C3A B:HEM605 4.3 18.7 1.0
C3C B:HEM605 4.3 14.8 1.0
C3B B:HEM605 4.3 16.2 1.0
C2B B:HEM605 4.3 21.6 1.0
C2C B:HEM605 4.3 15.5 1.0
NE2 B:GLN105 4.4 19.3 1.0
CG B:HIS351 4.5 19.6 1.0
ND1 B:HIS351 4.5 16.3 1.0
CD2 B:LEU433 4.8 14.9 1.0

Reference:

V.Viswanathan, S.N.Pandey, P.Sharma, C.Rani, N.Ahmad, S.Sharma, T.P.Singh. Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. To Be Published.
Page generated: Wed Aug 7 01:24:56 2024

Last articles

Cl in 4PHL
Cl in 4PHK
Cl in 4PHH
Cl in 4PGO
Cl in 4PF8
Cl in 4PFN
Cl in 4PC2
Cl in 4PBU
Cl in 4PET
Cl in 4PD4
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy