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Iron in PDB 6lqw: Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.

Protein crystallography data

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw was solved by V.Viswanathan, S.N.Pandey, N.Ahmad, C.Rani, P.Sharma, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.64 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.295, 96.732, 83.931, 90.00, 90.30, 90.00
R / Rfree (%) 21.2 / 29.2

Other elements in 6lqw:

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. (pdb code 6lqw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6lqw

Go back to Iron Binding Sites List in 6lqw
Iron binding site 1 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:20.3
occ:1.00
FE A:HEM603 0.0 20.3 1.0
NC A:HEM603 1.9 15.0 1.0
ND A:HEM603 2.0 16.7 1.0
NB A:HEM603 2.0 14.0 1.0
NA A:HEM603 2.1 13.6 1.0
NE2 A:HIS351 2.3 15.8 1.0
O2 A:PEO604 2.8 16.3 1.0
C1C A:HEM603 3.0 15.8 1.0
C4C A:HEM603 3.0 15.4 1.0
C1D A:HEM603 3.0 19.5 1.0
C4B A:HEM603 3.0 14.6 1.0
C4D A:HEM603 3.1 17.8 1.0
C1A A:HEM603 3.1 16.4 1.0
C4A A:HEM603 3.1 17.4 1.0
C1B A:HEM603 3.1 15.9 1.0
O1 A:PEO604 3.1 20.9 1.0
CD2 A:HIS351 3.2 20.8 1.0
CE1 A:HIS351 3.3 19.3 1.0
CHC A:HEM603 3.3 14.9 1.0
CHD A:HEM603 3.4 16.0 1.0
CHA A:HEM603 3.5 18.4 1.0
CHB A:HEM603 3.5 15.4 1.0
C2C A:HEM603 4.2 19.6 1.0
C3C A:HEM603 4.2 14.3 1.0
NE2 A:GLN105 4.2 17.6 1.0
C2D A:HEM603 4.2 19.5 1.0
C3B A:HEM603 4.3 13.9 1.0
C3D A:HEM603 4.3 22.5 1.0
C2B A:HEM603 4.3 16.8 1.0
C2A A:HEM603 4.3 19.1 1.0
C3A A:HEM603 4.3 22.6 1.0
CG A:HIS351 4.4 22.0 1.0
ND1 A:HIS351 4.4 21.7 1.0
CD2 A:LEU433 4.8 17.9 1.0

Iron binding site 2 out of 2 in 6lqw

Go back to Iron Binding Sites List in 6lqw
Iron binding site 2 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe605

b:16.1
occ:1.00
FE B:HEM605 0.0 16.1 1.0
ND B:HEM605 2.0 13.4 1.0
NA B:HEM605 2.0 14.1 1.0
NB B:HEM605 2.1 16.9 1.0
NC B:HEM605 2.1 11.8 1.0
NE2 B:HIS351 2.4 15.9 1.0
O2 B:PEO606 2.9 20.1 1.0
C1D B:HEM605 3.0 14.1 1.0
C4D B:HEM605 3.0 18.3 1.0
C4C B:HEM605 3.1 16.1 1.0
C1A B:HEM605 3.1 13.8 1.0
C4A B:HEM605 3.1 15.6 1.0
C4B B:HEM605 3.1 17.3 1.0
C1B B:HEM605 3.1 18.7 1.0
C1C B:HEM605 3.1 12.5 1.0
CD2 B:HIS351 3.3 14.8 1.0
CHD B:HEM605 3.4 16.4 1.0
CHA B:HEM605 3.4 15.3 1.0
CHB B:HEM605 3.4 16.1 1.0
CHC B:HEM605 3.5 14.2 1.0
CE1 B:HIS351 3.5 17.0 1.0
O1 B:PEO606 3.7 31.1 1.0
C2D B:HEM605 4.3 17.7 1.0
C3D B:HEM605 4.3 19.0 1.0
C2A B:HEM605 4.3 14.8 1.0
C3A B:HEM605 4.3 18.7 1.0
C3C B:HEM605 4.3 14.8 1.0
C3B B:HEM605 4.3 16.2 1.0
C2B B:HEM605 4.3 21.6 1.0
C2C B:HEM605 4.3 15.5 1.0
NE2 B:GLN105 4.4 19.3 1.0
CG B:HIS351 4.5 19.6 1.0
ND1 B:HIS351 4.5 16.3 1.0
CD2 B:LEU433 4.8 14.9 1.0

Reference:

V.Viswanathan, S.N.Pandey, P.Sharma, C.Rani, N.Ahmad, S.Sharma, T.P.Singh. Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. To Be Published.
Page generated: Wed Aug 7 01:24:56 2024

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