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Iron in PDB 6ls0: Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15

Enzymatic activity of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15

All present enzymatic activity of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15:
1.16.3.2;

Protein crystallography data

The structure of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15, PDB code: 6ls0 was solved by G.Zhao, X.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.22 / 1.87
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.48, 94.12, 109.16, 90, 90, 90
R / Rfree (%) 22.5 / 25.2

Iron Binding Sites:

The binding sites of Iron atom in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 (pdb code 6ls0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 7 binding sites of Iron where determined in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15, PDB code: 6ls0:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7;

Iron binding site 1 out of 7 in 6ls0

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Iron binding site 1 out of 7 in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:44.2
occ:1.00
 O H:HOH313 1.9 43.2 1.0
OE1 H:GLU19 2.0 35.8 1.0
OE1 H:GLU52 2.2 34.7 1.0
ND1 H:HIS55 2.3 37.4 1.0
O H:HOH302 2.4 40.7 1.0
CD H:GLU19 2.8 38.9 1.0
O H:HOH316 3.0 44.1 1.0
OE2 H:GLU19 3.1 44.4 1.0
FE H:FE202 3.2 50.1 1.0
CD H:GLU52 3.2 41.5 1.0
CE1 H:HIS55 3.3 36.4 1.0
CG H:HIS55 3.3 33.8 1.0
CB H:HIS55 3.6 32.1 1.0
OE2 H:GLU52 3.7 38.3 1.0
OE1 H:GLN129 4.0 47.1 1.0
CG H:GLU19 4.2 33.0 1.0
NE2 H:HIS55 4.4 42.0 1.0
CD2 H:HIS55 4.4 36.0 1.0
CG H:GLU52 4.5 32.1 1.0
CA H:GLU52 4.6 34.1 1.0
CB H:GLU19 4.6 32.1 1.0
CB H:GLU52 4.6 35.9 1.0
CG1 H:VAL99 4.7 38.4 1.0
OE1 H:GLU132 4.7 49.9 1.0
OE1 H:GLU96 4.9 40.8 1.0
OG H:SER22 4.9 46.1 1.0

Iron binding site 2 out of 7 in 6ls0

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Iron binding site 2 out of 7 in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe202

b:50.1
occ:1.00
 O H:HOH313 2.1 43.2 1.0
OE2 H:GLU52 2.2 38.3 1.0
O H:HOH316 2.2 44.1 1.0
OE1 H:GLU132 2.3 49.9 1.0
OE2 H:GLU96 2.3 52.5 1.0
OE1 H:GLU96 2.5 40.8 1.0
CD H:GLU96 2.7 49.2 1.0
CD H:GLU52 2.9 41.5 1.0
OE1 H:GLU52 3.0 34.7 1.0
FE H:FE201 3.2 44.2 1.0
CD H:GLU132 3.3 50.7 1.0
OE1 H:GLN129 4.0 47.1 1.0
CG H:GLU96 4.1 47.0 1.0
NE2 H:GLN48 4.1 39.8 1.0
OE2 H:GLU132 4.2 55.4 1.0
CG H:GLU132 4.2 49.5 1.0
CG H:GLU52 4.3 32.1 1.0
OH H:TYR26 4.3 50.4 1.0
CE2 H:TYR26 4.4 40.3 1.0
ND1 H:HIS55 4.4 37.4 1.0
CE1 H:HIS55 4.4 36.4 1.0
CB H:GLU132 4.4 50.4 1.0
O H:HOH302 4.6 40.7 1.0
NE2 H:GLN129 4.7 44.8 1.0
OE1 H:GLU19 4.7 35.8 1.0
OG H:SER22 4.8 46.1 1.0
CD H:GLN129 4.8 49.1 1.0
CZ H:TYR26 4.8 43.1 1.0

Iron binding site 3 out of 7 in 6ls0

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Iron binding site 3 out of 7 in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:43.9
occ:1.00
 O A:HOH314 1.9 41.7 1.0
OE1 A:GLU132 2.2 42.6 1.0
OE2 A:GLU96 2.2 46.9 1.0
OE2 A:GLU52 2.2 38.2 1.0
O A:HOH338 2.4 43.3 1.0
OE1 A:GLU96 2.5 41.9 1.0
CD A:GLU96 2.7 41.6 1.0
CD A:GLU52 2.9 36.1 1.0
OE1 A:GLU52 2.9 38.8 1.0
FE A:FE202 3.1 32.6 0.5
CD A:GLU132 3.3 44.1 1.0
OE1 A:GLN129 4.0 39.8 1.0
NE2 A:GLN48 4.1 38.1 1.0
OE2 A:GLU132 4.1 53.0 1.0
CG A:GLU132 4.1 43.6 1.0
CG A:GLU96 4.2 33.2 1.0
CG A:GLU52 4.3 28.7 1.0
CB A:GLU132 4.4 37.0 1.0
OH A:TYR26 4.4 40.3 1.0
CE2 A:TYR26 4.4 32.4 1.0
O A:HOH302 4.4 43.6 1.0
CE1 A:HIS55 4.5 40.9 1.0
ND1 A:HIS55 4.5 40.2 1.0
NE2 A:GLN129 4.6 32.6 1.0
OE1 A:GLU19 4.7 35.7 1.0
CD A:GLN129 4.8 37.8 1.0
CZ A:TYR26 4.9 40.4 1.0

Iron binding site 4 out of 7 in 6ls0

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Iron binding site 4 out of 7 in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:32.6
occ:0.54
 OE1 A:GLU19 2.0 35.7 1.0
O A:HOH314 2.1 41.7 1.0
OE1 A:GLU52 2.1 38.8 1.0
O A:HOH302 2.1 43.6 1.0
ND1 A:HIS55 2.3 40.2 1.0
O A:HOH338 2.9 43.3 1.0
CD A:GLU19 3.0 40.0 1.0
CE1 A:HIS55 3.1 40.9 1.0
FE A:FE201 3.1 43.9 1.0
CD A:GLU52 3.2 36.1 1.0
OE2 A:GLU19 3.3 47.2 1.0
CG A:HIS55 3.4 34.1 1.0
OE2 A:GLU52 3.7 38.2 1.0
CB A:HIS55 3.8 32.4 1.0
OE1 A:GLN129 4.2 39.8 1.0
NE2 A:HIS55 4.3 41.3 1.0
CG A:GLU19 4.3 33.8 1.0
OE1 A:GLU132 4.4 42.6 1.0
CD2 A:HIS55 4.4 39.3 1.0
CG A:GLU52 4.5 28.7 1.0
CA A:GLU52 4.5 29.5 1.0
CB A:GLU52 4.6 27.1 1.0
CB A:GLU19 4.7 31.6 1.0
CG1 A:VAL99 4.7 38.1 1.0
CD A:GLU132 4.9 44.1 1.0

Iron binding site 5 out of 7 in 6ls0

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Iron binding site 5 out of 7 in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:32.7
occ:0.60
 OE1 B:GLU19 1.9 41.7 1.0
OE1 B:GLU52 2.2 38.0 1.0
ND1 B:HIS55 2.2 37.2 1.0
O B:HOH306 2.3 45.3 1.0
FE B:FE202 2.6 69.7 1.0
O B:HOH336 2.8 47.9 1.0
CD B:GLU19 2.9 43.4 1.0
CE1 B:HIS55 3.0 38.7 1.0
CD B:GLU52 3.2 40.0 1.0
OE2 B:GLU19 3.2 46.5 1.0
CG B:HIS55 3.3 33.3 1.0
OE2 B:GLU52 3.5 41.8 1.0
CB B:HIS55 3.7 32.2 1.0
OE1 B:GLN129 4.0 49.5 1.0
NE2 B:HIS55 4.2 39.2 1.0
CG B:GLU19 4.3 38.6 1.0
OE1 B:GLU132 4.3 61.0 1.0
CD2 B:HIS55 4.4 34.6 1.0
CG B:GLU52 4.5 32.0 1.0
CA B:GLU52 4.7 31.7 1.0
CG1 B:VAL99 4.7 43.7 1.0
OE1 B:GLU96 4.7 50.7 1.0
CB B:GLU19 4.8 40.3 1.0
CB B:GLU52 4.8 33.2 1.0
OE2 B:GLU96 4.9 51.8 1.0

Iron binding site 6 out of 7 in 6ls0

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Iron binding site 6 out of 7 in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:69.7
occ:1.00
 OE1 B:GLU132 2.4 61.0 1.0
OE2 B:GLU52 2.5 41.8 1.0
OE1 B:GLU96 2.6 50.7 1.0
FE B:FE201 2.6 32.7 0.6
OE2 B:GLU96 2.6 51.8 1.0
O B:HOH336 2.8 47.9 1.0
CD B:GLU96 2.9 49.5 1.0
OE1 B:GLU52 3.0 38.0 1.0
CD B:GLU52 3.1 40.0 1.0
OE1 B:GLN129 3.5 49.5 1.0
CD B:GLU132 3.5 57.1 1.0
CE1 B:HIS55 3.9 38.7 1.0
ND1 B:HIS55 3.9 37.2 1.0
O B:HOH306 4.0 45.3 1.0
CG B:GLU132 4.0 52.0 1.0
OE1 B:GLU19 4.3 41.7 1.0
CG B:GLU96 4.3 42.6 1.0
CB B:GLU132 4.4 46.7 1.0
CD B:GLN129 4.4 46.8 1.0
NE2 B:GLN129 4.5 47.8 1.0
NE2 B:GLN48 4.6 38.8 1.0
CG B:GLU52 4.6 32.0 1.0
OE2 B:GLU132 4.6 52.3 1.0
CG1 B:VAL99 4.9 43.7 1.0
CE2 B:TYR26 5.0 36.1 1.0
OH B:TYR26 5.0 46.8 1.0

Iron binding site 7 out of 7 in 6ls0

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Iron binding site 7 out of 7 in the Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:51.6
occ:1.00
 OE1 C:GLU19 2.1 35.8 1.0
OE1 C:GLU52 2.3 38.2 1.0
O C:HOH306 2.3 47.1 1.0
O C:HOH310 2.5 52.0 1.0
ND1 C:HIS55 2.6 38.0 1.0
O C:HOH337 2.7 49.3 1.0
CD C:GLU52 3.0 37.8 1.0
CD C:GLU19 3.2 38.2 1.0
OE2 C:GLU52 3.2 43.5 1.0
CE1 C:HIS55 3.4 41.6 1.0
OE2 C:GLU19 3.5 46.2 1.0
CG C:HIS55 3.6 39.4 1.0
CB C:HIS55 3.9 34.3 1.0
CG C:GLU52 4.4 34.7 1.0
CG C:GLU19 4.5 37.9 1.0
NE2 C:HIS55 4.6 44.5 1.0
CA C:GLU52 4.6 30.9 1.0
CD2 C:HIS55 4.7 39.5 1.0
OG C:SER22 4.7 37.9 1.0
NE2 C:GLN129 4.7 58.8 1.0
CB C:GLU52 4.8 34.5 1.0
CG1 C:VAL99 4.8 46.4 1.0
CB C:SER22 4.9 32.5 1.0
OE1 C:GLU96 4.9 51.6 1.0
CB C:GLU19 4.9 35.7 1.0
OE2 C:GLU96 5.0 52.3 1.0

Reference:

G.Zhao, X.Zhang. Rod-Shaped Crystal of Tmftn Mutant-T4FY Stimulited By PLL15 To Be Published.
Page generated: Wed Aug 7 01:30:36 2024

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