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Iron in PDB 6m54: Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film

Enzymatic activity of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film

All present enzymatic activity of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film:
1.16.3.1;

Iron Binding Sites:

The binding sites of Iron atom in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film (pdb code 6m54). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film, PDB code: 6m54:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 6m54

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Iron binding site 1 out of 6 in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:22.0
occ:1.00
 NE2 Q:HIS174 3.3 63.8 1.0
NE2 D:HIS174 3.3 68.3 1.0
NE2 T:HIS174 3.3 69.0 1.0
NE2 A:HIS174 3.3 62.0 1.0
CE1 D:HIS174 4.0 68.3 1.0
CE1 Q:HIS174 4.0 63.8 1.0
CE1 T:HIS174 4.0 69.0 1.0
CE1 A:HIS174 4.0 62.0 1.0
CD2 Q:LEU170 4.0 62.8 1.0
CD2 D:LEU170 4.0 67.2 1.0
CD2 A:LEU170 4.0 61.4 1.0
CD2 T:LEU170 4.0 68.8 1.0
CD2 Q:HIS174 4.4 63.8 1.0
CD2 D:HIS174 4.4 68.3 1.0
CD2 T:HIS174 4.4 69.0 1.0
CD2 A:HIS174 4.4 62.0 1.0

Iron binding site 2 out of 6 in 6m54

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Iron binding site 2 out of 6 in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:19.5
occ:1.00
 NE2 C:HIS174 3.3 64.1 1.0
NE2 S:HIS174 3.3 63.4 1.0
NE2 B:HIS174 3.3 64.8 1.0
NE2 R:HIS174 3.3 58.3 1.0
CE1 C:HIS174 4.0 64.1 1.0
CE1 B:HIS174 4.0 64.8 1.0
CE1 R:HIS174 4.0 58.3 1.0
CE1 S:HIS174 4.0 63.4 1.0
CD2 C:LEU170 4.0 63.4 1.0
CD2 B:LEU170 4.0 64.6 1.0
CD2 S:LEU170 4.0 63.2 1.0
CD2 R:LEU170 4.0 58.8 1.0
CD2 C:HIS174 4.4 64.1 1.0
CD2 B:HIS174 4.4 64.8 1.0
CD2 R:HIS174 4.4 58.3 1.0
CD2 S:HIS174 4.4 63.4 1.0

Iron binding site 3 out of 6 in 6m54

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Iron binding site 3 out of 6 in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:17.9
occ:1.00
 NE2 E:HIS174 3.3 56.4 1.0
NE2 H:HIS174 3.3 62.4 1.0
NE2 P:HIS174 3.3 64.8 1.0
NE2 M:HIS174 3.3 60.1 1.0
CE1 M:HIS174 4.0 60.1 1.0
CE1 E:HIS174 4.0 56.4 1.0
CE1 H:HIS174 4.0 62.4 1.0
CE1 P:HIS174 4.0 64.8 1.0
CD2 E:LEU170 4.0 56.7 1.0
CD2 P:LEU170 4.0 64.8 1.0
CD2 H:LEU170 4.0 62.4 1.0
CD2 M:LEU170 4.0 60.3 1.0
CD2 E:HIS174 4.4 56.4 1.0
CD2 H:HIS174 4.4 62.4 1.0
CD2 P:HIS174 4.4 64.8 1.0
CD2 M:HIS174 4.4 60.1 1.0

Iron binding site 4 out of 6 in 6m54

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Iron binding site 4 out of 6 in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:29.3
occ:1.00
 NE2 O:HIS174 3.3 64.6 1.0
NE2 G:HIS174 3.3 63.8 1.0
NE2 F:HIS174 3.3 57.6 1.0
NE2 N:HIS174 3.3 61.7 1.0
CE1 G:HIS174 4.0 63.8 1.0
CE1 O:HIS174 4.0 64.6 1.0
CE1 F:HIS174 4.0 57.6 1.0
CE1 N:HIS174 4.0 61.7 1.0
CD2 G:LEU170 4.0 62.9 1.0
CD2 F:LEU170 4.0 57.5 1.0
CD2 O:LEU170 4.0 64.5 1.0
CD2 N:LEU170 4.0 61.1 1.0
CD2 O:HIS174 4.4 64.6 1.0
CD2 G:HIS174 4.4 63.8 1.0
CD2 N:HIS174 4.4 61.7 1.0
CD2 F:HIS174 4.4 57.6 1.0

Iron binding site 5 out of 6 in 6m54

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Iron binding site 5 out of 6 in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:30.0
occ:1.00
 NE2 I:HIS174 3.3 62.6 1.0
NE2 L:HIS174 3.3 64.0 1.0
NE2 V:HIS174 3.3 63.1 1.0
NE2 W:HIS174 3.3 64.0 1.0
CE1 I:HIS174 4.0 62.6 1.0
CE1 L:HIS174 4.0 64.0 1.0
CE1 W:HIS174 4.0 64.0 1.0
CE1 V:HIS174 4.0 63.1 1.0
CD2 L:LEU170 4.0 63.4 1.0
CD2 V:LEU170 4.0 63.0 1.0
CD2 W:LEU170 4.0 64.0 1.0
CD2 I:LEU170 4.0 62.5 1.0
CD2 I:HIS174 4.4 62.6 1.0
CD2 L:HIS174 4.4 64.0 1.0
CD2 V:HIS174 4.4 63.1 1.0
CD2 W:HIS174 4.4 64.0 1.0

Iron binding site 6 out of 6 in 6m54

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Iron binding site 6 out of 6 in the Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Human Apo Ferritin Frozen on Tem Grid with Amorphous Nickel Titanium Alloy Supporting Film within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:30.0
occ:1.00
 NE2 U:HIS174 3.3 56.6 1.0
NE2 K:HIS174 3.3 61.6 1.0
NE2 J:HIS174 3.3 56.6 1.0
NE2 X:HIS174 3.3 63.7 1.0
CE1 U:HIS174 4.0 56.6 1.0
CE1 K:HIS174 4.0 61.6 1.0
CE1 J:HIS174 4.0 56.6 1.0
CE1 X:HIS174 4.0 63.7 1.0
CD2 U:LEU170 4.0 56.8 1.0
CD2 J:LEU170 4.0 56.8 1.0
CD2 K:LEU170 4.0 61.8 1.0
CD2 X:LEU170 4.0 64.0 1.0
CD2 U:HIS174 4.4 56.6 1.0
CD2 K:HIS174 4.4 61.6 1.0
CD2 J:HIS174 4.4 56.6 1.0
CD2 X:HIS174 4.4 63.7 1.0

Reference:

X.Huang, L.Zhang, Z.Wen, H.Chen, S.Li, G.Ji, C.Yin, F.Sun. Amorphous Nickel Titanium Alloy Film: A New Choice For Cryo Electron Microscopy Sample Preparation To Be Published.
Page generated: Wed Aug 6 09:50:13 2025

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