Atomistry » Iron » PDB 6o6m-6op1 » 6o9m
Atomistry »
  Iron »
    PDB 6o6m-6op1 »
      6o9m »

Iron in PDB 6o9m: Structure of the Human Apo Tfiih

Enzymatic activity of Structure of the Human Apo Tfiih

All present enzymatic activity of Structure of the Human Apo Tfiih:
3.6.4.12;

Other elements in 6o9m:

The structure of Structure of the Human Apo Tfiih also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of the Human Apo Tfiih (pdb code 6o9m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of the Human Apo Tfiih, PDB code: 6o9m:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6o9m

Go back to Iron Binding Sites List in 6o9m
Iron binding site 1 out of 4 in the Structure of the Human Apo Tfiih


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Human Apo Tfiih within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
FE1 0:SF4801 0.0 0.0 1.0
S4 0:SF4801 2.1 0.0 1.0
S2 0:SF4801 2.1 0.0 1.0
S3 0:SF4801 2.2 0.0 1.0
SG 0:CYS116 2.2 0.2 1.0
FE3 0:SF4801 2.9 0.0 1.0
FE2 0:SF4801 2.9 0.0 1.0
CB 0:CYS116 3.0 0.5 1.0
FE4 0:SF4801 3.3 0.0 1.0
CA 0:CYS116 3.6 0.6 1.0
CD2 0:HIS118 3.7 0.2 1.0
S1 0:SF4801 3.8 0.0 1.0
SG 0:CYS134 4.2 0.2 1.0
NE2 0:HIS118 4.3 0.9 1.0
N 0:ILE117 4.5 1.0 1.0
C 0:CYS116 4.6 0.5 1.0
N 0:CYS116 4.6 0.9 1.0
CG 0:HIS118 4.7 0.3 1.0
O 0:LEU115 4.7 0.4 1.0
CB 0:CYS134 4.8 0.2 1.0
C 0:LEU115 5.0 0.8 1.0
CG1 0:VAL121 5.0 0.2 1.0

Iron binding site 2 out of 4 in 6o9m

Go back to Iron Binding Sites List in 6o9m
Iron binding site 2 out of 4 in the Structure of the Human Apo Tfiih


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Human Apo Tfiih within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
FE2 0:SF4801 0.0 0.0 1.0
S3 0:SF4801 2.1 0.0 1.0
S4 0:SF4801 2.2 0.0 1.0
S1 0:SF4801 2.2 0.0 1.0
SG 0:CYS155 2.3 0.7 1.0
FE1 0:SF4801 2.9 0.0 1.0
FE4 0:SF4801 3.0 0.0 1.0
FE3 0:SF4801 3.0 0.0 1.0
S2 0:SF4801 3.6 0.0 1.0
CB 0:CYS155 3.8 0.1 1.0
OG1 0:THR138 3.9 0.2 1.0
NH1 0:ARG299 4.0 0.0 1.0
NE2 0:HIS118 4.2 0.9 1.0
SG 0:CYS134 4.2 0.2 1.0
CD2 0:HIS118 4.3 0.2 1.0
CA 0:CYS155 4.5 0.6 1.0
SG 0:CYS190 4.7 0.0 1.0
SG 0:CYS116 4.9 0.2 1.0

Iron binding site 3 out of 4 in 6o9m

Go back to Iron Binding Sites List in 6o9m
Iron binding site 3 out of 4 in the Structure of the Human Apo Tfiih


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Human Apo Tfiih within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
FE3 0:SF4801 0.0 0.0 1.0
S1 0:SF4801 2.1 0.0 1.0
S4 0:SF4801 2.2 0.0 1.0
S2 0:SF4801 2.3 0.0 1.0
SG 0:CYS134 2.3 0.2 1.0
FE1 0:SF4801 2.9 0.0 1.0
FE4 0:SF4801 2.9 0.0 1.0
FE2 0:SF4801 3.0 0.0 1.0
NH1 0:ARG299 3.2 0.0 1.0
NH2 0:ARG299 3.5 0.0 1.0
S3 0:SF4801 3.6 0.0 1.0
CZ 0:ARG299 3.8 0.0 1.0
CB 0:CYS134 3.8 0.2 1.0
CD1 0:LEU115 4.2 0.6 1.0
CG 0:LEU115 4.3 0.8 1.0
CD2 0:LEU115 4.7 93.3 1.0
OG1 0:THR138 4.8 0.2 1.0
SG 0:CYS116 4.9 0.2 1.0
CA 0:CYS134 4.9 0.5 1.0
SG 0:CYS190 5.0 0.0 1.0
CB 0:CYS116 5.0 0.5 1.0

Iron binding site 4 out of 4 in 6o9m

Go back to Iron Binding Sites List in 6o9m
Iron binding site 4 out of 4 in the Structure of the Human Apo Tfiih


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Human Apo Tfiih within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
FE4 0:SF4801 0.0 0.0 1.0
S2 0:SF4801 2.1 0.0 1.0
S1 0:SF4801 2.1 0.0 1.0
SG 0:CYS190 2.2 0.0 1.0
S3 0:SF4801 2.2 0.0 1.0
FE3 0:SF4801 2.9 0.0 1.0
FE2 0:SF4801 3.0 0.0 1.0
FE1 0:SF4801 3.3 0.0 1.0
CB 0:CYS190 3.6 0.0 1.0
S4 0:SF4801 3.8 0.0 1.0
CE2 0:PHE157 4.1 0.4 1.0
CA 0:CYS190 4.4 0.0 1.0
CE2 0:PHE193 4.5 0.0 1.0
O 0:LEU115 4.5 0.4 1.0
CD2 0:PHE157 4.6 0.5 1.0
CD2 0:PHE193 4.7 0.0 1.0
SG 0:CYS155 4.8 0.7 1.0
CD 0:PRO191 4.8 0.0 1.0
CZ 0:PHE157 4.9 0.9 1.0
CD1 0:LEU115 4.9 0.6 1.0
NH1 0:ARG299 4.9 0.0 1.0

Reference:

C.Yan, T.Dodd, Y.He, J.A.Tainer, S.E.Tsutakawa, I.Ivanov. Transcription Preinitiation Complex Structure and Dynamics Provide Insight Into Genetic Diseases. Nat.Struct.Mol.Biol. V. 26 397 2019.
ISSN: ESSN 1545-9985
PubMed: 31110295
DOI: 10.1038/S41594-019-0220-3
Page generated: Wed Aug 7 04:13:01 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy