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Iron in PDB 6qk1: R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor

Enzymatic activity of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor

All present enzymatic activity of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor:
1.17.4.1;

Protein crystallography data

The structure of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qk1 was solved by J.J.Griese, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.85 / 1.75
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.868, 97.304, 129.112, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.1

Other elements in 6qk1:

The structure of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor (pdb code 6qk1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qk1:

Iron binding site 1 out of 1 in 6qk1

Go back to Iron Binding Sites List in 6qk1
Iron binding site 1 out of 1 in the R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:32.5
occ:1.00
 O1 A:PLM401 1.8 32.7 1.0
OE1 A:GLU102 2.0 28.9 1.0
OE2 A:GLU167 2.1 27.8 1.0
OE2 A:GLU202 2.2 31.1 1.0
O A:HOH508 2.2 28.1 1.0
ND1 A:HIS205 2.3 31.1 1.0
C1 A:PLM401 2.9 32.1 1.0
HG2 A:GLU167 2.9 34.1 1.0
CD A:GLU167 3.0 32.0 1.0
CD A:GLU102 3.0 28.4 1.0
CD A:GLU202 3.2 45.8 1.0
CE1 A:HIS205 3.2 25.5 1.0
HE1 A:HIS205 3.2 30.6 1.0
O2 A:PLM401 3.4 39.9 1.0
OE2 A:GLU102 3.4 26.6 1.0
CG A:HIS205 3.4 21.0 1.0
MN A:MN3402 3.5 26.6 1.0
OE1 A:GLU202 3.5 47.9 1.0
CG A:GLU167 3.5 28.5 1.0
HB3 A:HIS205 3.6 28.1 1.0
HB2 A:HIS205 3.7 28.1 1.0
CB A:HIS205 3.8 23.5 1.0
HE2 A:TYR162 3.9 36.7 1.0
HA A:GLU202 4.0 36.0 1.0
HE2 A:PHE98 4.0 37.1 1.0
HG21 A:VAL72 4.1 30.9 1.0
OE1 A:GLU167 4.1 33.3 1.0
HG3 A:GLU167 4.2 34.1 1.0
HB3 A:GLU167 4.2 35.9 1.0
HE1 A:HIS105 4.2 28.1 1.0
C2 A:PLM401 4.3 40.9 1.0
CE2 A:PHE98 4.3 30.9 1.0
HZ A:PHE98 4.3 34.5 1.0
H22 A:PLM401 4.3 49.1 1.0
NE2 A:HIS205 4.4 30.5 1.0
CG A:GLU102 4.4 24.7 1.0
CG A:GLU202 4.5 39.9 1.0
CB A:GLU167 4.5 30.0 1.0
CD2 A:HIS205 4.5 27.3 1.0
HG2 A:GLU102 4.5 29.6 1.0
CZ A:PHE98 4.5 28.8 1.0
HG3 A:GLU202 4.6 47.8 1.0
H21 A:PLM401 4.6 49.1 1.0
HG3 A:GLU102 4.6 29.6 1.0
O A:HOH511 4.7 31.5 1.0
CE2 A:TYR162 4.8 30.6 1.0
CE1 A:HIS105 4.8 23.4 1.0
ND1 A:HIS105 4.8 22.8 1.0
CA A:GLU202 4.9 30.0 1.0
CG2 A:VAL72 4.9 25.8 1.0

Reference:

J.J.Griese, M.Hogbom. R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor To Be Published.
Page generated: Wed Aug 6 12:36:51 2025

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