Atomistry » Iron » PDB 6sor-6tjv » 6tb5
Atomistry »
  Iron »
    PDB 6sor-6tjv »
      6tb5 »

Iron in PDB 6tb5: The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H).

Protein crystallography data

The structure of The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H)., PDB code: 6tb5 was solved by M.G.Cuypers, S.Mcsweeney, C.V.Romao, E.P.Mitchell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.09 / 1.83
Space group P 2 3
Cell size a, b, c (Å), α, β, γ (°) 88.830, 88.830, 88.830, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.2

Other elements in 6tb5:

The structure of The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H). also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H). (pdb code 6tb5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H)., PDB code: 6tb5:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6tb5

Go back to Iron Binding Sites List in 6tb5
Iron binding site 1 out of 4 in the The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H).


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe303

b:33.8
occ:1.00
NE2 A:HIS70 2.2 24.8 1.0
O A:HOH476 2.2 31.4 1.0
CD2 A:HIS70 3.2 24.9 1.0
CE1 A:HIS70 3.2 25.0 1.0
CE1 A:HIS82 4.1 26.9 1.0
NE1 A:TRP71 4.3 23.3 1.0
ND1 A:HIS70 4.3 21.7 1.0
CG A:HIS70 4.3 22.4 1.0
CD1 A:TRP71 4.4 29.4 1.0
O A:HOH484 4.4 43.2 1.0
NE2 A:HIS82 4.4 23.8 1.0
OE1 A:GLN86 4.5 32.5 1.0
NZ A:LYS67 4.6 34.0 1.0
O A:HOH465 4.7 40.5 1.0

Iron binding site 2 out of 4 in 6tb5

Go back to Iron Binding Sites List in 6tb5
Iron binding site 2 out of 4 in the The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H).


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe304

b:95.9
occ:0.33
FE A:FE305 2.4 89.0 0.3
OE1 A:GLU171 2.8 78.3 1.0
CD A:GLU171 3.9 86.2 1.0
ND2 A:ASN167 4.0 56.4 1.0
CG A:GLU171 4.5 36.7 1.0
OE2 A:GLU171 4.8 77.8 1.0
OD1 A:ASN167 4.9 67.2 1.0
CG A:ASN167 4.9 48.8 1.0

Iron binding site 3 out of 4 in 6tb5

Go back to Iron Binding Sites List in 6tb5
Iron binding site 3 out of 4 in the The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H).


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe305

b:89.0
occ:0.33
FE A:FE304 2.4 95.9 0.3
OD1 A:ASN167 2.7 67.2 1.0
ND2 A:ASN167 3.0 56.4 1.0
CG A:ASN167 3.2 48.8 1.0
OE1 A:GLU171 3.8 78.3 1.0
CB A:ASN167 4.7 33.0 1.0
CD A:GLU171 4.8 86.2 1.0
CG A:GLU171 5.0 36.7 1.0

Iron binding site 4 out of 4 in 6tb5

Go back to Iron Binding Sites List in 6tb5
Iron binding site 4 out of 4 in the The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H).


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe306

b:37.8
occ:0.33
O A:HOH508 2.1 39.4 1.0
OD1 A:ASN167 3.4 67.2 1.0
CG A:ASN167 4.2 48.8 1.0
OE1 A:GLN170 4.3 46.0 1.0
CB A:ASN167 4.4 33.0 1.0
O A:PRO163 4.6 28.5 1.0
CA A:ASN167 4.8 25.4 1.0
NE2 A:GLN170 4.8 54.2 1.0
CD A:GLN170 5.0 51.8 1.0

Reference:

M.G.Cuypers, S.Mcsweeney, C.V.Romao, E.P.Mitchell. The Crystal Structure of the DPS2 From Deinococcus Radiodurans to 1.83A Resolution (Sequentially Soaked in CACL2 [5MM] For 20 Min, Then in Ammonium Iron(II) Sulfate [10MM] For 2H). To Be Published.
Page generated: Wed Aug 7 10:41:04 2024

Last articles

Ca in 5GX7
Ca in 5GX8
Ca in 5GX6
Ca in 5GTW
Ca in 5GW7
Ca in 5GUB
Ca in 5GUW
Ca in 5GUX
Ca in 5GTI
Ca in 5GQC
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy