Iron in PDB 6txi: Crystal Structure of Thermotoga Maritima E65A Ferritin
Enzymatic activity of Crystal Structure of Thermotoga Maritima E65A Ferritin
All present enzymatic activity of Crystal Structure of Thermotoga Maritima E65A Ferritin:
1.16.3.2;
Protein crystallography data
The structure of Crystal Structure of Thermotoga Maritima E65A Ferritin, PDB code: 6txi
was solved by
P.Wilk,
P.Grudnik,
M.Kumar,
J.Heddle,
S.Chakraborti,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.94 /
1.76
|
|
Space group
|
H 3 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
175.7,
175.7,
353.568,
90,
90,
120
|
|
R / Rfree (%)
|
18 /
20.5
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Thermotoga Maritima E65A Ferritin
(pdb code 6txi). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Crystal Structure of Thermotoga Maritima E65A Ferritin, PDB code: 6txi:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 1 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe205
b:47.7
occ:0.38
|
OE1
|
A:GLU52
|
1.9
|
47.6
|
1.0
|
|
OE1
|
A:GLU19
|
2.2
|
47.4
|
1.0
|
|
ND1
|
A:HIS55
|
2.4
|
54.8
|
1.0
|
|
O
|
A:HOH343
|
2.5
|
92.0
|
1.0
|
|
CD
|
A:GLU52
|
2.9
|
38.1
|
1.0
|
|
CD
|
A:GLU19
|
3.2
|
54.0
|
1.0
|
|
CE1
|
A:HIS55
|
3.3
|
51.8
|
1.0
|
|
HE1
|
A:HIS55
|
3.3
|
62.2
|
1.0
|
|
OE2
|
A:GLU52
|
3.3
|
49.7
|
1.0
|
|
OE2
|
A:GLU19
|
3.5
|
64.5
|
1.0
|
|
CG
|
A:HIS55
|
3.5
|
44.1
|
1.0
|
|
HB2
|
A:HIS55
|
3.5
|
40.5
|
1.0
|
|
HA
|
A:GLU52
|
3.6
|
38.0
|
1.0
|
|
HG11
|
A:VAL99
|
3.7
|
51.2
|
1.0
|
|
HB3
|
A:HIS55
|
3.7
|
40.5
|
1.0
|
|
CB
|
A:HIS55
|
3.8
|
33.7
|
1.0
|
|
HB3
|
A:GLU52
|
4.1
|
38.3
|
1.0
|
|
OE1
|
A:GLN129
|
4.2
|
37.4
|
1.0
|
|
CG
|
A:GLU52
|
4.2
|
47.5
|
1.0
|
|
CA
|
A:GLU52
|
4.4
|
31.6
|
1.0
|
|
NE2
|
A:HIS55
|
4.4
|
41.9
|
1.0
|
|
CB
|
A:GLU52
|
4.5
|
31.9
|
1.0
|
|
HB3
|
A:GLU19
|
4.5
|
36.0
|
1.0
|
|
HG
|
A:SER22
|
4.5
|
50.2
|
1.0
|
|
CD2
|
A:HIS55
|
4.5
|
42.6
|
1.0
|
|
CG
|
A:GLU19
|
4.6
|
49.8
|
1.0
|
|
CG1
|
A:VAL99
|
4.6
|
42.6
|
1.0
|
|
HG3
|
A:GLU52
|
4.6
|
57.0
|
1.0
|
|
HB2
|
A:SER22
|
4.6
|
34.9
|
1.0
|
|
HA
|
A:GLU19
|
4.7
|
41.0
|
1.0
|
|
OE2
|
A:GLU132
|
4.8
|
76.0
|
1.0
|
|
HG12
|
A:VAL99
|
4.8
|
51.2
|
1.0
|
|
HG21
|
A:VAL99
|
4.8
|
50.0
|
1.0
|
|
HB3
|
A:SER22
|
4.8
|
34.9
|
1.0
|
|
OE1
|
A:GLU132
|
4.9
|
81.9
|
1.0
|
|
HG2
|
A:GLU52
|
4.9
|
57.0
|
1.0
|
|
O
|
A:GLU52
|
4.9
|
32.0
|
1.0
|
|
OE1
|
A:GLU96
|
4.9
|
37.2
|
1.0
|
|
HG13
|
A:VAL99
|
4.9
|
51.2
|
1.0
|
|
HG3
|
A:GLU19
|
5.0
|
59.8
|
1.0
|
|
CB
|
A:GLU19
|
5.0
|
30.0
|
1.0
|
|
Iron binding site 2 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 2 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe208
b:37.6
occ:0.59
|
OE1
|
B:GLU52
|
1.9
|
39.4
|
1.0
|
|
OE1
|
B:GLU19
|
2.1
|
40.5
|
1.0
|
|
O
|
B:HOH352
|
2.3
|
42.9
|
1.0
|
|
ND1
|
B:HIS55
|
2.3
|
44.0
|
1.0
|
|
O
|
B:HOH323
|
2.4
|
44.4
|
1.0
|
|
O
|
B:HOH333
|
2.5
|
48.3
|
1.0
|
|
CD
|
B:GLU52
|
2.9
|
43.3
|
1.0
|
|
CD
|
B:GLU19
|
3.1
|
40.6
|
1.0
|
|
CE1
|
B:HIS55
|
3.1
|
47.1
|
1.0
|
|
HE1
|
B:HIS55
|
3.2
|
56.6
|
1.0
|
|
OE2
|
B:GLU52
|
3.3
|
37.1
|
1.0
|
|
OE2
|
B:GLU19
|
3.4
|
44.1
|
1.0
|
|
CG
|
B:HIS55
|
3.4
|
32.9
|
1.0
|
|
HG11
|
B:VAL99
|
3.6
|
40.2
|
1.0
|
|
HB2
|
B:HIS55
|
3.6
|
36.8
|
1.0
|
|
HA
|
B:GLU52
|
3.6
|
32.6
|
1.0
|
|
HB3
|
B:HIS55
|
3.7
|
36.8
|
1.0
|
|
CB
|
B:HIS55
|
3.8
|
30.6
|
1.0
|
|
OE1
|
B:GLN129
|
4.2
|
34.0
|
1.0
|
|
HB3
|
B:GLU52
|
4.2
|
36.1
|
1.0
|
|
CG
|
B:GLU52
|
4.2
|
39.8
|
1.0
|
|
NE2
|
B:HIS55
|
4.3
|
35.8
|
1.0
|
|
HB3
|
B:GLU19
|
4.4
|
33.7
|
1.0
|
|
OE1
|
B:GLU96
|
4.4
|
35.4
|
1.0
|
|
CG
|
B:GLU19
|
4.5
|
30.7
|
1.0
|
|
CA
|
B:GLU52
|
4.5
|
27.1
|
1.0
|
|
HA
|
B:GLU19
|
4.5
|
34.7
|
1.0
|
|
CD2
|
B:HIS55
|
4.5
|
41.3
|
1.0
|
|
HB2
|
B:SER22
|
4.5
|
37.8
|
1.0
|
|
CG1
|
B:VAL99
|
4.5
|
33.4
|
1.0
|
|
CB
|
B:GLU52
|
4.5
|
30.0
|
1.0
|
|
OE2
|
B:GLU96
|
4.6
|
50.9
|
1.0
|
|
HG3
|
B:GLU52
|
4.6
|
47.8
|
1.0
|
|
HB3
|
B:SER22
|
4.6
|
37.8
|
1.0
|
|
HG21
|
B:VAL99
|
4.7
|
45.9
|
1.0
|
|
HG12
|
B:VAL99
|
4.7
|
40.2
|
1.0
|
|
HG3
|
B:GLU19
|
4.8
|
36.9
|
1.0
|
|
CB
|
B:GLU19
|
4.9
|
28.0
|
1.0
|
|
HG3
|
B:GLU132
|
4.9
|
113.2
|
1.0
|
|
OG
|
B:SER22
|
4.9
|
35.4
|
1.0
|
|
CB
|
B:SER22
|
4.9
|
31.5
|
1.0
|
|
HG2
|
B:GLU52
|
4.9
|
47.8
|
1.0
|
|
HG13
|
B:VAL99
|
4.9
|
40.2
|
1.0
|
|
CD
|
B:GLU96
|
5.0
|
52.9
|
1.0
|
|
Iron binding site 3 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 3 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:53.9
occ:0.56
|
O
|
C:HOH358
|
2.0
|
149.1
|
1.0
|
|
OE1
|
C:GLU52
|
2.2
|
49.1
|
1.0
|
|
ND1
|
C:HIS55
|
2.2
|
57.2
|
1.0
|
|
OE1
|
C:GLU19
|
2.5
|
52.4
|
1.0
|
|
O
|
C:HOH339
|
2.8
|
81.3
|
1.0
|
|
CE1
|
C:HIS55
|
3.1
|
52.8
|
1.0
|
|
HE1
|
C:HIS55
|
3.2
|
63.4
|
1.0
|
|
CD
|
C:GLU52
|
3.2
|
51.1
|
1.0
|
|
CG
|
C:HIS55
|
3.3
|
50.4
|
1.0
|
|
CD
|
C:GLU19
|
3.3
|
67.9
|
1.0
|
|
OE2
|
C:GLU19
|
3.4
|
55.8
|
1.0
|
|
HB3
|
C:HIS55
|
3.5
|
57.8
|
1.0
|
|
OE2
|
C:GLU52
|
3.5
|
53.6
|
1.0
|
|
HB2
|
C:HIS55
|
3.5
|
57.8
|
1.0
|
|
CB
|
C:HIS55
|
3.7
|
48.1
|
1.0
|
|
HG11
|
C:VAL99
|
3.7
|
56.1
|
1.0
|
|
OE1
|
C:GLN129
|
3.8
|
45.6
|
1.0
|
|
HA
|
C:GLU52
|
3.8
|
44.7
|
1.0
|
|
NE2
|
C:HIS55
|
4.2
|
53.9
|
1.0
|
|
CD2
|
C:HIS55
|
4.4
|
44.9
|
1.0
|
|
OE1
|
C:GLU96
|
4.5
|
42.9
|
1.0
|
|
CG
|
C:GLU52
|
4.5
|
43.7
|
1.0
|
|
CG1
|
C:VAL99
|
4.6
|
46.7
|
1.0
|
|
HG12
|
C:VAL99
|
4.7
|
56.1
|
1.0
|
|
CG
|
C:GLU19
|
4.7
|
54.5
|
1.0
|
|
HB3
|
C:GLU19
|
4.7
|
44.2
|
1.0
|
|
CA
|
C:GLU52
|
4.7
|
37.2
|
1.0
|
|
CD
|
C:GLN129
|
4.8
|
48.7
|
1.0
|
|
OE2
|
C:GLU96
|
4.8
|
49.8
|
1.0
|
|
HD2
|
C:PHE125
|
4.8
|
68.7
|
1.0
|
|
HG3
|
C:GLU52
|
4.9
|
52.5
|
1.0
|
|
HG3
|
C:GLU132
|
4.9
|
75.6
|
1.0
|
|
HE22
|
C:GLN129
|
4.9
|
54.5
|
1.0
|
|
HB3
|
C:GLU52
|
4.9
|
44.9
|
1.0
|
|
HA
|
C:GLU19
|
4.9
|
42.1
|
1.0
|
|
HE2
|
C:HIS55
|
5.0
|
64.8
|
1.0
|
|
HG21
|
C:VAL99
|
5.0
|
62.6
|
1.0
|
|
CB
|
C:GLU52
|
5.0
|
37.4
|
1.0
|
|
Iron binding site 4 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 4 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe204
b:280.6
occ:0.97
|
OE1
|
D:GLU19
|
2.0
|
123.8
|
1.0
|
|
O
|
D:HOH308
|
2.1
|
289.7
|
1.0
|
|
ND1
|
D:HIS55
|
2.2
|
74.9
|
1.0
|
|
OE1
|
D:GLU52
|
2.3
|
56.6
|
1.0
|
|
O
|
D:HOH357
|
2.4
|
61.5
|
1.0
|
|
CD
|
D:GLU19
|
2.8
|
60.5
|
1.0
|
|
O
|
D:HOH334
|
2.9
|
83.9
|
1.0
|
|
OE2
|
D:GLU19
|
3.0
|
75.7
|
1.0
|
|
CE1
|
D:HIS55
|
3.2
|
52.0
|
1.0
|
|
CG
|
D:HIS55
|
3.3
|
56.3
|
1.0
|
|
HE1
|
D:HIS55
|
3.3
|
62.5
|
1.0
|
|
HB3
|
D:HIS55
|
3.4
|
45.7
|
1.0
|
|
CD
|
D:GLU52
|
3.4
|
53.4
|
1.0
|
|
HB2
|
D:HIS55
|
3.4
|
45.7
|
1.0
|
|
CB
|
D:HIS55
|
3.6
|
38.0
|
1.0
|
|
HG11
|
D:VAL99
|
3.6
|
43.5
|
1.0
|
|
OE2
|
D:GLU52
|
3.8
|
52.1
|
1.0
|
|
HA
|
D:GLU52
|
3.8
|
40.6
|
1.0
|
|
OE1
|
D:GLN129
|
4.0
|
40.1
|
1.0
|
|
CG
|
D:GLU19
|
4.2
|
46.1
|
1.0
|
|
NE2
|
D:HIS55
|
4.3
|
41.1
|
1.0
|
|
HB3
|
D:GLU19
|
4.3
|
41.8
|
1.0
|
|
CD2
|
D:HIS55
|
4.4
|
50.4
|
1.0
|
|
CG1
|
D:VAL99
|
4.5
|
36.2
|
1.0
|
|
HB3
|
D:GLU52
|
4.5
|
47.7
|
1.0
|
|
HG3
|
D:GLU19
|
4.5
|
55.3
|
1.0
|
|
HA
|
D:GLU19
|
4.6
|
43.4
|
1.0
|
|
HG12
|
D:VAL99
|
4.6
|
43.5
|
1.0
|
|
CG
|
D:GLU52
|
4.7
|
53.5
|
1.0
|
|
CA
|
D:GLU52
|
4.7
|
33.8
|
1.0
|
|
OE1
|
D:GLU96
|
4.7
|
43.4
|
1.0
|
|
HD1
|
D:PHE125
|
4.8
|
66.2
|
1.0
|
|
CB
|
D:GLU19
|
4.8
|
34.8
|
1.0
|
|
HG13
|
D:VAL99
|
4.9
|
43.5
|
1.0
|
|
CB
|
D:GLU52
|
4.9
|
39.7
|
1.0
|
|
HG2
|
D:GLU19
|
4.9
|
55.3
|
1.0
|
|
HE1
|
D:PHE125
|
4.9
|
60.6
|
1.0
|
|
HB2
|
D:SER22
|
4.9
|
46.9
|
1.0
|
|
HG21
|
D:VAL99
|
4.9
|
54.5
|
1.0
|
|
OE2
|
D:GLU96
|
5.0
|
52.1
|
1.0
|
|
Iron binding site 5 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 5 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:30.3
occ:0.38
|
OE1
|
E:GLU52
|
1.8
|
40.9
|
1.0
|
|
O
|
E:HOH373
|
1.9
|
49.9
|
1.0
|
|
OE1
|
E:GLU19
|
2.1
|
44.5
|
1.0
|
|
O
|
E:HOH317
|
2.1
|
48.3
|
1.0
|
|
ND1
|
E:HIS55
|
2.3
|
56.1
|
1.0
|
|
O
|
E:HOH356
|
2.7
|
51.5
|
1.0
|
|
CD
|
E:GLU52
|
2.9
|
58.8
|
1.0
|
|
CD
|
E:GLU19
|
3.1
|
77.9
|
1.0
|
|
CE1
|
E:HIS55
|
3.2
|
46.3
|
1.0
|
|
HE1
|
E:HIS55
|
3.2
|
55.6
|
1.0
|
|
OE2
|
E:GLU19
|
3.4
|
63.3
|
1.0
|
|
OE2
|
E:GLU52
|
3.4
|
39.4
|
1.0
|
|
CG
|
E:HIS55
|
3.4
|
38.6
|
1.0
|
|
HB2
|
E:HIS55
|
3.6
|
46.2
|
1.0
|
|
HG11
|
E:VAL99
|
3.6
|
46.0
|
1.0
|
|
HA
|
E:GLU52
|
3.7
|
42.1
|
1.0
|
|
HB3
|
E:HIS55
|
3.7
|
46.2
|
1.0
|
|
CB
|
E:HIS55
|
3.8
|
38.4
|
1.0
|
|
OE1
|
E:GLN129
|
4.1
|
37.2
|
1.0
|
|
CG
|
E:GLU52
|
4.2
|
50.6
|
1.0
|
|
HB3
|
E:GLU52
|
4.3
|
49.2
|
1.0
|
|
NE2
|
E:HIS55
|
4.4
|
38.8
|
1.0
|
|
HB3
|
E:GLU19
|
4.4
|
47.8
|
1.0
|
|
OE1
|
E:GLU96
|
4.4
|
39.9
|
1.0
|
|
CG
|
E:GLU19
|
4.5
|
79.3
|
1.0
|
|
CD2
|
E:HIS55
|
4.5
|
37.5
|
1.0
|
|
CA
|
E:GLU52
|
4.5
|
35.1
|
1.0
|
|
CB
|
E:GLU52
|
4.5
|
41.0
|
1.0
|
|
HA
|
E:GLU19
|
4.5
|
32.9
|
1.0
|
|
HG3
|
E:GLU52
|
4.6
|
60.8
|
1.0
|
|
CG1
|
E:VAL99
|
4.6
|
38.2
|
1.0
|
|
HB2
|
E:SER22
|
4.6
|
39.4
|
1.0
|
|
OE2
|
E:GLU96
|
4.6
|
47.1
|
1.0
|
|
HB3
|
E:SER22
|
4.7
|
39.4
|
1.0
|
|
HG21
|
E:VAL99
|
4.7
|
49.5
|
1.0
|
|
HG12
|
E:VAL99
|
4.7
|
46.0
|
1.0
|
|
HG3
|
E:GLU19
|
4.8
|
95.2
|
1.0
|
|
CB
|
E:GLU19
|
4.9
|
39.8
|
1.0
|
|
HG2
|
E:GLU52
|
4.9
|
60.8
|
1.0
|
|
HE22
|
E:GLN129
|
5.0
|
42.9
|
1.0
|
|
CB
|
E:SER22
|
5.0
|
32.8
|
1.0
|
|
OG
|
E:SER22
|
5.0
|
39.7
|
1.0
|
|
CD
|
E:GLU96
|
5.0
|
44.1
|
1.0
|
|
Iron binding site 6 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 6 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe205
b:35.7
occ:0.41
|
OE1
|
F:GLU52
|
1.9
|
43.8
|
1.0
|
|
O
|
F:HOH335
|
2.2
|
46.8
|
1.0
|
|
OE1
|
F:GLU19
|
2.2
|
41.8
|
1.0
|
|
O
|
F:HOH308
|
2.3
|
66.4
|
1.0
|
|
ND1
|
F:HIS55
|
2.4
|
55.1
|
1.0
|
|
O
|
F:HOH340
|
2.7
|
51.6
|
1.0
|
|
CD
|
F:GLU52
|
2.9
|
44.2
|
1.0
|
|
CD
|
F:GLU19
|
3.0
|
50.2
|
1.0
|
|
CE1
|
F:HIS55
|
3.1
|
68.0
|
1.0
|
|
HE1
|
F:HIS55
|
3.2
|
81.6
|
1.0
|
|
OE2
|
F:GLU19
|
3.2
|
44.4
|
1.0
|
|
OE2
|
F:GLU52
|
3.4
|
42.2
|
1.0
|
|
CG
|
F:HIS55
|
3.5
|
50.2
|
1.0
|
|
HG11
|
F:VAL99
|
3.6
|
48.8
|
1.0
|
|
HB2
|
F:HIS55
|
3.6
|
45.7
|
1.0
|
|
HA
|
F:GLU52
|
3.6
|
41.8
|
1.0
|
|
HB3
|
F:HIS55
|
3.8
|
45.7
|
1.0
|
|
CB
|
F:HIS55
|
3.9
|
38.0
|
1.0
|
|
OE1
|
F:GLN129
|
4.1
|
36.4
|
1.0
|
|
CG
|
F:GLU52
|
4.2
|
33.5
|
1.0
|
|
HB3
|
F:GLU52
|
4.3
|
38.9
|
1.0
|
|
NE2
|
F:HIS55
|
4.3
|
52.7
|
1.0
|
|
CG
|
F:GLU19
|
4.4
|
45.0
|
1.0
|
|
OE2
|
F:GLU96
|
4.4
|
42.1
|
1.0
|
|
HB3
|
F:GLU19
|
4.5
|
44.1
|
1.0
|
|
CA
|
F:GLU52
|
4.5
|
34.8
|
1.0
|
|
CD2
|
F:HIS55
|
4.5
|
43.9
|
1.0
|
|
OE1
|
F:GLU96
|
4.5
|
47.8
|
1.0
|
|
HA
|
F:GLU19
|
4.5
|
44.9
|
1.0
|
|
CG1
|
F:VAL99
|
4.5
|
40.6
|
1.0
|
|
HB2
|
F:SER22
|
4.5
|
44.8
|
1.0
|
|
CB
|
F:GLU52
|
4.6
|
32.4
|
1.0
|
|
OE2
|
F:GLU132
|
4.6
|
63.8
|
1.0
|
|
HG3
|
F:GLU52
|
4.6
|
40.3
|
1.0
|
|
HB3
|
F:SER22
|
4.6
|
44.8
|
1.0
|
|
HG21
|
F:VAL99
|
4.7
|
45.0
|
1.0
|
|
HG12
|
F:VAL99
|
4.7
|
48.8
|
1.0
|
|
HG3
|
F:GLU19
|
4.8
|
54.1
|
1.0
|
|
CB
|
F:GLU19
|
4.9
|
36.7
|
1.0
|
|
CB
|
F:SER22
|
4.9
|
37.3
|
1.0
|
|
HG2
|
F:GLU52
|
4.9
|
40.3
|
1.0
|
|
OG
|
F:SER22
|
4.9
|
41.9
|
1.0
|
|
CD
|
F:GLU96
|
4.9
|
57.3
|
1.0
|
|
HG13
|
F:VAL99
|
5.0
|
48.8
|
1.0
|
|
Iron binding site 7 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 7 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:55.2
occ:0.49
|
OE1
|
G:GLU52
|
1.9
|
95.3
|
1.0
|
|
OE1
|
G:GLU19
|
2.2
|
60.6
|
1.0
|
|
O
|
G:HOH303
|
2.3
|
175.6
|
1.0
|
|
ND1
|
G:HIS55
|
2.4
|
60.4
|
1.0
|
|
O
|
G:HOH309
|
2.4
|
117.7
|
1.0
|
|
CD
|
G:GLU52
|
2.9
|
74.8
|
1.0
|
|
CD
|
G:GLU19
|
3.0
|
100.0
|
1.0
|
|
OE2
|
G:GLU19
|
3.1
|
67.8
|
1.0
|
|
CE1
|
G:HIS55
|
3.2
|
52.8
|
1.0
|
|
HE1
|
G:HIS55
|
3.2
|
63.4
|
1.0
|
|
OE2
|
G:GLU52
|
3.3
|
84.0
|
1.0
|
|
CG
|
G:HIS55
|
3.5
|
49.1
|
1.0
|
|
HB2
|
G:HIS55
|
3.5
|
51.7
|
1.0
|
|
HA
|
G:GLU52
|
3.6
|
61.2
|
1.0
|
|
HG11
|
G:VAL99
|
3.7
|
50.2
|
1.0
|
|
HB3
|
G:HIS55
|
3.8
|
51.7
|
1.0
|
|
CB
|
G:HIS55
|
3.8
|
43.1
|
1.0
|
|
OE1
|
G:GLN129
|
4.1
|
42.7
|
1.0
|
|
CG
|
G:GLU52
|
4.3
|
81.8
|
1.0
|
|
HB3
|
G:GLU52
|
4.3
|
87.9
|
1.0
|
|
O
|
G:HOH305
|
4.3
|
160.0
|
1.0
|
|
NE2
|
G:HIS55
|
4.4
|
47.0
|
1.0
|
|
HG
|
G:SER22
|
4.4
|
66.5
|
1.0
|
|
CG
|
G:GLU19
|
4.4
|
101.5
|
1.0
|
|
HB3
|
G:GLU19
|
4.5
|
76.6
|
1.0
|
|
CA
|
G:GLU52
|
4.5
|
51.0
|
1.0
|
|
CD2
|
G:HIS55
|
4.5
|
43.8
|
1.0
|
|
CG1
|
G:VAL99
|
4.6
|
41.8
|
1.0
|
|
CB
|
G:GLU52
|
4.6
|
73.2
|
1.0
|
|
OE1
|
G:GLU132
|
4.6
|
85.4
|
1.0
|
|
HA
|
G:GLU19
|
4.6
|
48.9
|
1.0
|
|
HG3
|
G:GLU52
|
4.7
|
98.3
|
1.0
|
|
HG12
|
G:VAL99
|
4.7
|
50.2
|
1.0
|
|
HB2
|
G:SER22
|
4.7
|
57.3
|
1.0
|
|
OE2
|
G:GLU96
|
4.7
|
52.5
|
1.0
|
|
OE1
|
G:GLU96
|
4.8
|
57.6
|
1.0
|
|
HG3
|
G:GLU19
|
4.8
|
121.9
|
1.0
|
|
HB3
|
G:SER22
|
4.9
|
57.3
|
1.0
|
|
HG2
|
G:GLU52
|
4.9
|
98.3
|
1.0
|
|
CB
|
G:GLU19
|
4.9
|
63.8
|
1.0
|
|
HG21
|
G:VAL99
|
4.9
|
59.0
|
1.0
|
|
HG2
|
G:GLU19
|
5.0
|
121.9
|
1.0
|
|
HG13
|
G:VAL99
|
5.0
|
50.2
|
1.0
|
|
Iron binding site 8 out
of 8 in 6txi
Go back to
Iron Binding Sites List in 6txi
Iron binding site 8 out
of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe204
b:41.1
occ:0.33
|
OE1
|
H:GLU52
|
1.8
|
60.1
|
1.0
|
|
OE1
|
H:GLU19
|
2.1
|
58.0
|
1.0
|
|
O
|
H:HOH332
|
2.1
|
60.1
|
1.0
|
|
O
|
H:HOH308
|
2.4
|
92.8
|
1.0
|
|
ND1
|
H:HIS55
|
2.5
|
56.2
|
1.0
|
|
O
|
H:HOH353
|
2.8
|
65.3
|
1.0
|
|
CD
|
H:GLU52
|
2.8
|
47.7
|
1.0
|
|
CD
|
H:GLU19
|
3.0
|
65.2
|
1.0
|
|
OE2
|
H:GLU19
|
3.2
|
63.7
|
1.0
|
|
CE1
|
H:HIS55
|
3.2
|
58.7
|
1.0
|
|
OE2
|
H:GLU52
|
3.2
|
55.8
|
1.0
|
|
HE1
|
H:HIS55
|
3.3
|
70.5
|
1.0
|
|
CG
|
H:HIS55
|
3.5
|
49.8
|
1.0
|
|
HG11
|
H:VAL99
|
3.6
|
56.4
|
1.0
|
|
HB2
|
H:HIS55
|
3.6
|
53.8
|
1.0
|
|
HA
|
H:GLU52
|
3.7
|
58.6
|
1.0
|
|
HB3
|
H:HIS55
|
3.9
|
53.8
|
1.0
|
|
CB
|
H:HIS55
|
3.9
|
44.7
|
1.0
|
|
OE1
|
H:GLN129
|
4.2
|
46.3
|
1.0
|
|
CG
|
H:GLU52
|
4.2
|
51.2
|
1.0
|
|
HB3
|
H:GLU52
|
4.3
|
68.5
|
1.0
|
|
HB3
|
H:GLU19
|
4.4
|
56.1
|
1.0
|
|
CG
|
H:GLU19
|
4.4
|
45.0
|
1.0
|
|
NE2
|
H:HIS55
|
4.4
|
50.7
|
1.0
|
|
HB2
|
H:SER22
|
4.4
|
62.4
|
1.0
|
|
HA
|
H:GLU19
|
4.4
|
50.4
|
1.0
|
|
OE1
|
H:GLU96
|
4.5
|
55.2
|
1.0
|
|
CG1
|
H:VAL99
|
4.5
|
47.0
|
1.0
|
|
CA
|
H:GLU52
|
4.5
|
48.8
|
1.0
|
|
HG3
|
H:GLU52
|
4.5
|
61.5
|
1.0
|
|
CB
|
H:GLU52
|
4.5
|
57.0
|
1.0
|
|
CD2
|
H:HIS55
|
4.6
|
52.0
|
1.0
|
|
HB3
|
H:SER22
|
4.6
|
62.4
|
1.0
|
|
HG21
|
H:VAL99
|
4.6
|
56.9
|
1.0
|
|
OE2
|
H:GLU96
|
4.6
|
62.0
|
1.0
|
|
HG12
|
H:VAL99
|
4.7
|
56.4
|
1.0
|
|
HG3
|
H:GLU19
|
4.8
|
54.0
|
1.0
|
|
CB
|
H:GLU19
|
4.8
|
46.7
|
1.0
|
|
HG2
|
H:GLU52
|
4.8
|
61.5
|
1.0
|
|
OE1
|
H:GLU132
|
4.9
|
81.8
|
1.0
|
|
CB
|
H:SER22
|
4.9
|
51.9
|
1.0
|
|
OG
|
H:SER22
|
4.9
|
65.7
|
1.0
|
|
HG2
|
H:GLU19
|
5.0
|
54.0
|
1.0
|
|
HG13
|
H:VAL99
|
5.0
|
56.4
|
1.0
|
|
Reference:
P.Wilk,
P.Grudnik,
M.Kumar,
J.Heddle,
S.Chakraborti.
Crystal Structure of Thermotoga Maritima Ferritin in Apo Form To Be Published.
Page generated: Wed Aug 6 14:28:18 2025
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