Iron in PDB 6vpv: Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum

All present enzymatic activity of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum:
1.97.1.12;

The structure of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum also contains other interesting chemical elements:

Magnesium

(Mg)

288 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum (pdb code 6vpv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum, PDB code: 6vpv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe844 b:70.6 occ:1.00 FE1 A:SF4844 0.0 70.6 1.0 SG B:CYS575 2.2 67.5 1.0 S2 A:SF4844 2.3 70.6 1.0 S4 A:SF4844 2.3 70.6 1.0 S3 A:SF4844 2.3 70.6 1.0 FE2 A:SF4844 2.7 70.6 1.0 FE3 A:SF4844 2.7 70.6 1.0 FE4 A:SF4844 2.7 70.6 1.0 CB B:CYS575 3.3 67.5 1.0 CA B:CYS575 3.7 67.5 1.0 S1 A:SF4844 3.9 70.6 1.0 N B:CYS575 3.9 67.5 1.0 CD1 A:ILE720 4.1 68.0 1.0 CZ3 B:TRP674 4.3 60.9 1.0 CB B:CYS566 4.5 71.9 1.0 C B:THR574 4.6 70.1 1.0 CG2 A:ILE720 4.6 68.0 1.0 SG B:CYS566 4.7 71.9 1.0 CG1 A:ILE720 4.8 68.0 1.0 SG A:CYS574 4.8 67.9 1.0 O B:THR574 4.9 70.1 1.0 SG A:CYS583 4.9 66.2 1.0 N B:THR574 4.9 70.1 1.0 CE3 B:TRP674 5.0 60.9 1.0

Iron binding site 2 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe844 b:70.6 occ:1.00 FE2 A:SF4844 0.0 70.6 1.0 SG A:CYS583 2.2 66.2 1.0 S1 A:SF4844 2.3 70.6 1.0 S3 A:SF4844 2.3 70.6 1.0 S4 A:SF4844 2.3 70.6 1.0 FE1 A:SF4844 2.7 70.6 1.0 FE3 A:SF4844 2.7 70.6 1.0 FE4 A:SF4844 2.7 70.6 1.0 CB A:CYS583 3.4 66.2 1.0 S2 A:SF4844 3.9 70.6 1.0 CA A:CYS583 4.2 66.2 1.0 CE3 B:TRP674 4.3 60.9 1.0 CD1 B:ILE709 4.3 65.2 1.0 CZ3 B:TRP674 4.4 60.9 1.0 SG B:CYS575 4.6 67.5 1.0 CB A:CYS574 4.7 67.9 1.0 SG A:CYS574 4.7 67.9 1.0 N A:CYS583 4.8 66.2 1.0 SG B:CYS566 4.8 71.9 1.0 CG2 B:ILE709 4.9 65.2 1.0

Iron binding site 3 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe844 b:70.6 occ:1.00 FE3 A:SF4844 0.0 70.6 1.0 SG A:CYS574 2.2 67.9 1.0 S1 A:SF4844 2.3 70.6 1.0 S4 A:SF4844 2.3 70.6 1.0 S2 A:SF4844 2.3 70.6 1.0 FE1 A:SF4844 2.7 70.6 1.0 FE2 A:SF4844 2.7 70.6 1.0 FE4 A:SF4844 2.7 70.6 1.0 CB A:CYS574 3.0 67.9 1.0 S3 A:SF4844 3.9 70.6 1.0 SG A:CYS583 4.4 66.2 1.0 CA A:CYS574 4.5 67.9 1.0 SG B:CYS566 4.6 71.9 1.0 N B:PRO569 4.6 73.5 1.0 CD1 A:ILE720 4.7 68.0 1.0 SG B:CYS575 4.7 67.5 1.0 CD B:PRO569 4.7 73.5 1.0 CB B:PRO569 4.7 73.5 1.0 CA A:GLY576 4.8 66.8 1.0 C A:GLY576 4.8 66.8 1.0 N A:GLY576 4.8 66.8 1.0 C B:GLY568 4.8 71.9 1.0 O A:GLY576 4.9 66.8 1.0 CA B:PRO569 4.9 73.5 1.0 N A:CYS574 4.9 67.9 1.0

Iron binding site 4 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe844 b:70.6 occ:1.00 FE4 A:SF4844 0.0 70.6 1.0 SG B:CYS566 2.2 71.9 1.0 S1 A:SF4844 2.3 70.6 1.0 S2 A:SF4844 2.3 70.6 1.0 S3 A:SF4844 2.3 70.6 1.0 FE1 A:SF4844 2.7 70.6 1.0 FE2 A:SF4844 2.7 70.6 1.0 CB B:CYS566 2.7 71.9 1.0 FE3 A:SF4844 2.7 70.6 1.0 S4 A:SF4844 3.9 70.6 1.0 CA B:CYS566 4.2 71.9 1.0 N B:GLY568 4.5 71.9 1.0 SG A:CYS583 4.6 66.2 1.0 SG A:CYS574 4.7 67.9 1.0 CA B:GLY568 4.7 71.9 1.0 N A:PRO577 4.7 65.9 1.0 C B:GLY568 4.7 71.9 1.0 N B:CYS566 4.7 71.9 1.0 O B:GLY568 4.8 71.9 1.0 SG B:CYS575 4.8 67.5 1.0 CB A:PRO577 4.8 65.9 1.0 CD1 B:ILE709 4.8 65.2 1.0 CD A:PRO577 4.8 65.9 1.0 O B:THR574 4.9 70.1 1.0 C A:GLY576 4.9 66.8 1.0 C B:CYS566 4.9 71.9 1.0 N B:ASP567 5.0 75.7 1.0 CA A:PRO577 5.0 65.9 1.0 CA B:CYS575 5.0 67.5 1.0

Iron binding site 5 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:77.7 occ:1.00 FE1 C:SF4101 0.0 77.7 1.0 SG C:CYS51 2.3 70.3 1.0 S4 C:SF4101 2.3 77.7 1.0 S3 C:SF4101 2.3 77.7 1.0 S2 C:SF4101 2.3 77.7 1.0 FE2 C:SF4101 2.7 77.7 1.0 FE4 C:SF4101 2.7 77.7 1.0 FE3 C:SF4101 2.7 77.7 1.0 N C:CYS51 3.5 70.3 1.0 N C:LYS52 3.6 73.1 1.0 CB C:CYS51 3.7 70.3 1.0 S1 C:SF4101 3.9 77.7 1.0 CA C:CYS51 4.0 70.3 1.0 CD C:PRO22 4.1 78.4 1.0 N C:ARG53 4.1 74.1 1.0 C C:CYS51 4.1 70.3 1.0 C C:GLY50 4.4 71.7 1.0 CA C:LYS52 4.5 73.1 1.0 N C:GLY50 4.5 71.7 1.0 CG2 C:VAL49 4.5 74.3 1.0 CG C:PRO22 4.6 78.4 1.0 SG C:CYS48 4.7 78.0 1.0 SG C:CYS54 4.7 75.7 1.0 CA C:GLY50 4.7 71.7 1.0 SG C:CYS21 4.8 78.8 1.0 C C:LYS52 4.8 73.1 1.0 CB C:ARG53 4.9 74.1 1.0 N C:CYS54 4.9 75.7 1.0

Iron binding site 6 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:77.7 occ:1.00 FE2 C:SF4101 0.0 77.7 1.0 SG C:CYS21 2.3 78.8 1.0 S1 C:SF4101 2.3 77.7 1.0 S3 C:SF4101 2.3 77.7 1.0 S4 C:SF4101 2.3 77.7 1.0 FE1 C:SF4101 2.7 77.7 1.0 FE3 C:SF4101 2.7 77.7 1.0 FE4 C:SF4101 2.7 77.7 1.0 CB C:CYS21 3.4 78.8 1.0 CA C:CYS21 3.8 78.8 1.0 S2 C:SF4101 3.9 77.7 1.0 CD C:PRO22 4.0 78.4 1.0 CB C:VAL25 4.1 82.6 1.0 CG2 C:VAL25 4.2 82.6 1.0 N C:PRO22 4.4 78.4 1.0 CD1 C:LEU26 4.4 82.6 1.0 C C:CYS21 4.5 78.8 1.0 SG C:CYS54 4.6 75.7 1.0 SG C:CYS51 4.6 70.3 1.0 CG C:LEU26 4.7 82.6 1.0 N C:LEU23 4.9 80.8 1.0 CG1 C:VAL25 4.9 82.6 1.0 SG C:CYS48 4.9 78.0 1.0 CB C:CYS54 4.9 75.7 1.0 N C:CYS21 5.0 78.8 1.0

Iron binding site 7 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:77.7 occ:1.00 FE3 C:SF4101 0.0 77.7 1.0 SG C:CYS54 2.3 75.7 1.0 S4 C:SF4101 2.3 77.7 1.0 S2 C:SF4101 2.3 77.7 1.0 S1 C:SF4101 2.3 77.7 1.0 FE2 C:SF4101 2.7 77.7 1.0 FE4 C:SF4101 2.7 77.7 1.0 FE1 C:SF4101 2.7 77.7 1.0 CB C:CYS54 3.4 75.7 1.0 S3 C:SF4101 3.9 77.7 1.0 N C:CYS54 3.9 75.7 1.0 CG2 C:VAL67 3.9 78.2 1.0 CA C:CYS54 4.3 75.7 1.0 N C:LYS52 4.3 73.1 1.0 CA C:LYS52 4.4 73.1 1.0 N C:ARG53 4.5 74.1 1.0 CD1 C:LEU26 4.6 82.6 1.0 SG C:CYS48 4.6 78.0 1.0 SG C:CYS21 4.7 78.8 1.0 SG C:CYS51 4.8 70.3 1.0 C C:LYS52 4.8 73.1 1.0

Iron binding site 8 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:77.7 occ:1.00 FE4 C:SF4101 0.0 77.7 1.0 SG C:CYS48 2.3 78.0 1.0 S2 C:SF4101 2.3 77.7 1.0 S1 C:SF4101 2.3 77.7 1.0 S3 C:SF4101 2.3 77.7 1.0 FE3 C:SF4101 2.7 77.7 1.0 FE2 C:SF4101 2.7 77.7 1.0 FE1 C:SF4101 2.7 77.7 1.0 CB C:CYS48 3.4 78.0 1.0 CA C:CYS48 3.9 78.0 1.0 S4 C:SF4101 3.9 77.7 1.0 N C:GLY50 4.1 71.7 1.0 N C:VAL49 4.2 74.3 1.0 CG2 C:VAL25 4.4 82.6 1.0 CG2 C:VAL5 4.4 80.1 1.0 C C:CYS48 4.4 78.0 1.0 CA C:GLY50 4.6 71.7 1.0 CB C:VAL25 4.6 82.6 1.0 CG1 C:VAL25 4.7 82.6 1.0 SG C:CYS21 4.7 78.8 1.0 N C:CYS51 4.8 70.3 1.0 CG1 C:VAL67 4.8 78.2 1.0 SG C:CYS51 4.9 70.3 1.0 SG C:CYS54 4.9 75.7 1.0 CG2 C:VAL67 4.9 78.2 1.0

Iron binding site 9 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:89.5 occ:1.00 FE1 C:SF4102 0.0 89.5 1.0 SG C:CYS58 2.3 84.5 1.0 S3 C:SF4102 2.3 89.5 1.0 S4 C:SF4102 2.3 89.5 1.0 S2 C:SF4102 2.3 89.5 1.0 FE4 C:SF4102 2.7 89.5 1.0 FE3 C:SF4102 2.7 89.5 1.0 FE2 C:SF4102 2.7 89.5 1.0 OG C:SER64 2.9 85.0 1.0 CB C:CYS58 3.4 84.5 1.0 CA C:CYS58 3.8 84.5 1.0 CG2 C:ILE65 3.8 80.1 1.0 S1 C:SF4102 3.9 89.5 1.0 CD C:PRO59 4.1 86.5 1.0 CB C:SER64 4.3 85.0 1.0 N C:ILE65 4.5 80.1 1.0 CB C:ILE65 4.6 80.1 1.0 SG C:CYS17 4.7 82.5 1.0 C C:CYS58 4.7 84.5 1.0 CB C:CYS17 4.7 82.5 1.0 N C:PRO59 4.7 86.5 1.0 N C:SER64 4.8 85.0 1.0 SG C:CYS14 4.8 87.9 1.0 OG1 C:THR60 4.8 91.8 1.0 SG C:CYS11 4.8 90.2 1.0 N C:CYS58 4.9 84.5 1.0 CA C:SER64 4.9 85.0 1.0

Iron binding site 10 out of 36 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:89.5 occ:1.00 FE2 C:SF4102 0.0 89.5 1.0 SG C:CYS17 2.3 82.5 1.0 S4 C:SF4102 2.3 89.5 1.0 S1 C:SF4102 2.3 89.5 1.0 S3 C:SF4102 2.3 89.5 1.0 FE4 C:SF4102 2.7 89.5 1.0 FE1 C:SF4102 2.7 89.5 1.0 FE3 C:SF4102 2.7 89.5 1.0 CB C:CYS17 3.1 82.5 1.0 N C:CYS17 3.7 82.5 1.0 S2 C:SF4102 3.9 89.5 1.0 CA C:CYS17 4.0 82.5 1.0 CB C:ALA40 4.2 87.5 1.0 CE C:MET28 4.5 92.9 1.0 CG2 C:ILE65 4.5 80.1 1.0 SG C:CYS11 4.6 90.2 1.0 N C:GLN16 4.6 83.6 1.0 SG C:CYS14 4.7 87.9 1.0 OG C:SER64 4.8 85.0 1.0 N C:THR15 4.8 85.8 1.0 SG C:CYS58 4.9 84.5 1.0 C C:GLN16 4.9 83.6 1.0 CA C:THR15 4.9 85.8 1.0 CB C:ILE65 4.9 80.1 1.0 C C:THR15 5.0 85.8 1.0

Z.Dobson, H.Toporik, N.Vaughn, S.Lin, D.Williams, P.Fromme, Y.Mazor. Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum To Be Published.