Iron in PDB 6xma: Crystal Structure of Iron-Bound LSD4 From Sphingobium Sp. Strain Syk-6

The structure of Crystal Structure of Iron-Bound LSD4 From Sphingobium Sp. Strain Syk-6, PDB code: 6xma was solved by E.Kuatsjah, A.C.Chan, R.Katahira, G.T.Beckham, M.E.Murphy, L.D.Eltis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.79 / 1.45
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	86.03, 112.527, 115.384, 90, 90, 90
R / Rfree (%)	14.9 / 17.1

The binding sites of Iron atom in the Crystal Structure of Iron-Bound LSD4 From Sphingobium Sp. Strain Syk-6 (pdb code 6xma). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Iron-Bound LSD4 From Sphingobium Sp. Strain Syk-6, PDB code: 6xma:

Iron binding site 1 out of 1 in the Crystal Structure of Iron-Bound LSD4 From Sphingobium Sp. Strain Syk-6


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Iron-Bound LSD4 From Sphingobium Sp. Strain Syk-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:12.4 occ:0.78 NE2 A:HIS218 2.0 9.1 1.0 NE2 A:HIS476 2.1 8.6 1.0 NE2 A:HIS284 2.1 12.1 1.0 NE2 A:HIS167 2.3 10.0 1.0 O A:HOH1100 2.3 14.9 1.0 CE1 A:HIS218 2.9 9.2 1.0 CE1 A:HIS476 3.0 9.1 1.0 CD2 A:HIS284 3.0 10.7 1.0 CD2 A:HIS218 3.0 7.1 1.0 CD2 A:HIS476 3.1 9.4 1.0 HE1 A:HIS218 3.1 11.0 1.0 CE1 A:HIS284 3.1 11.8 1.0 CE1 A:HIS167 3.1 10.1 1.0 HE1 A:HIS476 3.2 10.9 1.0 HD2 A:HIS284 3.2 12.8 1.0 HE1 A:HIS167 3.2 12.0 1.0 HD2 A:HIS218 3.3 8.5 1.0 HE1 A:HIS284 3.3 14.2 1.0 HD2 A:HIS476 3.3 11.3 1.0 CD2 A:HIS167 3.3 10.2 1.0 HD2 A:HIS167 3.5 12.2 1.0 O A:HOH611 4.0 38.7 1.0 ND1 A:HIS476 4.0 7.2 1.0 ND1 A:HIS218 4.1 9.6 1.0 CG A:HIS476 4.1 8.8 1.0 CG A:HIS218 4.1 9.3 1.0 ND1 A:HIS284 4.2 13.2 1.0 CG A:HIS284 4.2 10.5 1.0 O A:HOH1252 4.2 33.8 1.0 HG23 A:THR121 4.3 10.1 1.0 ND1 A:HIS167 4.3 9.4 1.0 CG A:HIS167 4.4 8.4 1.0 HG22 A:THR121 4.4 10.1 1.0 HD22 A:LEU475 4.5 14.3 1.0 HG21 A:THR121 4.5 10.1 1.0 CG2 A:THR121 4.6 8.4 1.0 HD1 A:HIS476 4.8 8.6 1.0 HD1 A:HIS218 4.8 11.5 1.0 HB2 A:ASP219 4.8 11.6 1.0 O A:HOH857 4.9 20.1 1.0 HD1 A:HIS284 5.0 15.8 1.0 HE1 A:PHE354 5.0 21.1 1.0

E.Kuatsjah, A.C.K.Chan, R.Katahira, S.J.Haugen, G.T.Beckham, M.E.Murphy, L.D.Eltis. Structural and Functional Analysis of Lignostilbene Dioxygenases From Sphingobium Sp. Syk-6 J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X