Atomistry » Iron » PDB 6zag-6zkg » 6zce
Atomistry »
  Iron »
    PDB 6zag-6zkg »
      6zce »

Iron in PDB 6zce: Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex

Other elements in 6zce:

The structure of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex (pdb code 6zce). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex, PDB code: 6zce:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 1 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE1 k:SF4705 0.0 17.7 1.0
S4 k:SF4705 2.3 17.7 1.0
S2 k:SF4705 2.3 17.7 1.0
S3 k:SF4705 2.3 17.7 1.0
FE2 k:SF4705 2.7 17.7 1.0
FE3 k:SF4705 2.7 17.7 1.0
FE4 k:SF4705 2.7 17.7 1.0
CB k:CYS29 3.3 0.9 1.0
CA k:CYS29 3.7 0.9 1.0
S1 k:SF4705 3.9 17.7 1.0
CB k:CYS61 4.3 0.8 1.0
C k:CYS29 4.5 0.9 1.0
N k:PRO30 4.5 0.9 1.0
N k:CYS29 4.8 0.9 1.0
CB k:CYS38 4.8 0.8 1.0

Iron binding site 2 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 2 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE2 k:SF4705 0.0 17.7 1.0
S3 k:SF4705 2.3 17.7 1.0
S4 k:SF4705 2.3 17.7 1.0
S1 k:SF4705 2.3 17.7 1.0
FE1 k:SF4705 2.7 17.7 1.0
FE3 k:SF4705 2.7 17.7 1.0
FE4 k:SF4705 2.7 17.7 1.0
CB k:CYS55 3.8 0.8 1.0
S2 k:SF4705 3.9 17.7 1.0
CA k:CYS55 4.0 0.8 1.0
N k:ILE56 4.1 0.8 1.0
CB k:ALA9 4.3 0.7 1.0
N k:GLY57 4.4 0.8 1.0
C k:CYS55 4.4 0.8 1.0
CB k:CYS38 4.8 0.8 1.0

Iron binding site 3 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 3 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE3 k:SF4705 0.0 17.7 1.0
S1 k:SF4705 2.3 17.7 1.0
S2 k:SF4705 2.3 17.7 1.0
S4 k:SF4705 2.3 17.7 1.0
FE1 k:SF4705 2.7 17.7 1.0
FE2 k:SF4705 2.7 17.7 1.0
FE4 k:SF4705 2.7 17.7 1.0
CB k:CYS61 3.2 0.8 1.0
N k:CYS61 3.8 0.8 1.0
S3 k:SF4705 3.9 17.7 1.0
CB k:ALA9 4.1 0.7 1.0
CA k:CYS61 4.1 0.8 1.0
N k:GLY59 4.2 0.8 1.0
N k:ILE60 4.5 0.8 1.0
CA k:GLY59 4.7 0.8 1.0
C k:GLY59 4.8 0.8 1.0
N k:CYS58 4.9 0.8 1.0
C k:ILE60 4.9 0.8 1.0

Iron binding site 4 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 4 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE4 k:SF4705 0.0 17.7 1.0
S1 k:SF4705 2.3 17.7 1.0
S3 k:SF4705 2.3 17.7 1.0
S2 k:SF4705 2.3 17.7 1.0
FE3 k:SF4705 2.7 17.7 1.0
FE2 k:SF4705 2.7 17.7 1.0
FE1 k:SF4705 2.7 17.7 1.0
N k:CYS58 3.5 0.8 1.0
CB k:CYS58 3.8 0.8 1.0
S4 k:SF4705 3.9 17.7 1.0
CA k:CYS58 4.1 0.8 1.0
N k:GLY59 4.2 0.8 1.0
N k:GLY57 4.2 0.8 1.0
C k:CYS58 4.5 0.8 1.0
C k:GLY57 4.6 0.8 1.0
N k:ILE56 4.6 0.8 1.0
CA k:GLY57 4.8 0.8 1.0
C k:ILE56 4.9 0.8 1.0
N k:ILE60 4.9 0.8 1.0

Iron binding site 5 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 5 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE1 k:SF4706 0.0 23.9 1.0
S3 k:SF4706 2.3 23.9 1.0
S4 k:SF4706 2.3 23.9 1.0
S2 k:SF4706 2.3 23.9 1.0
FE2 k:SF4706 2.7 23.9 1.0
FE4 k:SF4706 2.7 23.9 1.0
FE3 k:SF4706 2.7 23.9 1.0
CB k:ALA48 3.5 0.8 1.0
S1 k:SF4706 3.9 23.9 1.0
CB k:PRO18 4.2 0.8 1.0
N k:ALA48 4.2 0.8 1.0
CA k:ALA48 4.4 0.8 1.0
O k:CYS16 4.5 0.8 1.0
CB k:CYS16 4.5 0.8 1.0
C k:CYS16 4.7 0.8 1.0
CA k:PRO18 4.7 0.8 1.0
CA k:CYS16 4.8 0.8 1.0

Iron binding site 6 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 6 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE2 k:SF4706 0.0 23.9 1.0
S4 k:SF4706 2.3 23.9 1.0
S1 k:SF4706 2.3 23.9 1.0
S3 k:SF4706 2.3 23.9 1.0
FE1 k:SF4706 2.7 23.9 1.0
FE3 k:SF4706 2.7 23.9 1.0
FE4 k:SF4706 2.7 23.9 1.0
S2 k:SF4706 3.9 23.9 1.0
CA k:GLN23 3.9 0.7 1.0
CA k:PRO18 4.0 0.8 1.0
CB k:PRO18 4.1 0.8 1.0
N k:GLN23 4.1 0.7 1.0
O k:CYS21 4.3 0.8 1.0
CB k:CYS21 4.5 0.8 1.0
C k:GLN23 4.7 0.7 1.0
N k:GLU24 4.7 0.7 1.0
C k:CYS21 4.8 0.8 1.0
O k:LYS17 4.8 0.7 1.0
N k:PRO18 4.8 0.8 1.0
CB k:GLN23 4.8 0.7 1.0
C k:PRO18 5.0 0.8 1.0

Iron binding site 7 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 7 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE3 k:SF4706 0.0 23.9 1.0
S1 k:SF4706 2.3 23.9 1.0
S2 k:SF4706 2.3 23.9 1.0
S4 k:SF4706 2.3 23.9 1.0
FE2 k:SF4706 2.7 23.9 1.0
FE1 k:SF4706 2.7 23.9 1.0
FE4 k:SF4706 2.7 23.9 1.0
CB k:CYS25 3.1 0.8 1.0
N k:CYS25 3.7 0.8 1.0
S3 k:SF4706 3.9 23.9 1.0
CA k:CYS25 4.1 0.8 1.0
N k:GLU24 4.3 0.7 1.0
C k:GLN23 4.4 0.7 1.0
CA k:GLN23 4.5 0.7 1.0
C k:GLU24 4.9 0.7 1.0
CB k:ALA48 4.9 0.8 1.0
O k:GLN23 5.0 0.7 1.0

Iron binding site 8 out of 8 in 6zce

Go back to Iron Binding Sites List in 6zce
Iron binding site 8 out of 8 in the Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of A Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE4 k:SF4706 0.0 23.9 1.0
S3 k:SF4706 2.3 23.9 1.0
S2 k:SF4706 2.3 23.9 1.0
S1 k:SF4706 2.3 23.9 1.0
FE1 k:SF4706 2.7 23.9 1.0
FE3 k:SF4706 2.7 23.9 1.0
FE2 k:SF4706 2.7 23.9 1.0
S4 k:SF4706 3.9 23.9 1.0
O k:PHE67 4.4 0.7 1.0
CB k:CYS65 4.6 0.7 1.0
CA k:CYS16 4.7 0.8 1.0
CB k:ALA69 4.8 0.8 1.0
CB k:CYS16 4.9 0.8 1.0

Reference:

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Wed Aug 7 18:24:27 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy