Atomistry » Iron » PDB 6zah-6zkh » 6zjn
Atomistry »
  Iron »
    PDB 6zah-6zkh »
      6zjn »

Iron in PDB 6zjn: Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State (pdb code 6zjn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State, PDB code: 6zjn:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 1 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
FE1 1:SF4501 0.0 50.0 1.0
S2 1:SF4501 2.2 50.0 1.0
S4 1:SF4501 2.3 50.0 1.0
S3 1:SF4501 2.3 50.0 1.0
FE4 1:SF4501 2.4 50.0 1.0
FE3 1:SF4501 2.5 50.0 1.0
FE2 1:SF4501 2.6 50.0 1.0
CB 1:CYS356 3.3 50.0 1.0
N 1:CYS356 3.4 50.0 1.0
CB 1:CYS400 3.5 50.0 1.0
S1 1:SF4501 3.6 50.0 1.0
O 1:CYS400 3.9 50.0 1.0
CA 1:CYS356 4.0 50.0 1.0
CB 1:CYS359 4.2 50.0 1.0
C 1:CYS400 4.2 50.0 1.0
CA 1:CYS400 4.2 50.0 1.0
N 1:CYS400 4.3 50.0 1.0
N 1:LYS355 4.5 50.0 1.0
C 1:LYS355 4.5 50.0 1.0
CB 1:LYS355 4.8 50.0 1.0
CA 1:LYS355 4.8 50.0 1.0
O 1:CYS356 4.9 50.0 1.0
C 1:CYS356 5.0 50.0 1.0

Iron binding site 2 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 2 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
FE2 1:SF4501 0.0 50.0 1.0
S1 1:SF4501 2.3 50.0 1.0
S4 1:SF4501 2.3 50.0 1.0
S3 1:SF4501 2.3 50.0 1.0
FE1 1:SF4501 2.6 50.0 1.0
FE3 1:SF4501 2.6 50.0 1.0
FE4 1:SF4501 2.7 50.0 1.0
CB 1:CYS359 3.6 50.0 1.0
CA 1:SER352 3.7 50.0 1.0
N 1:CYS353 3.8 50.0 1.0
S2 1:SF4501 3.9 50.0 1.0
CB 1:LEU402 4.2 50.0 1.0
CB 1:SER352 4.2 50.0 1.0
O 1:GLU351 4.3 50.0 1.0
C 1:SER352 4.3 50.0 1.0
N 1:SER352 4.6 50.0 1.0
C 1:GLU351 4.8 50.0 1.0
N 1:GLY354 4.9 50.0 1.0
CB 1:CYS353 4.9 50.0 1.0
CA 1:CYS353 4.9 50.0 1.0
CB 1:CYS356 5.0 50.0 1.0

Iron binding site 3 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 3 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
FE3 1:SF4501 0.0 50.0 1.0
S4 1:SF4501 2.3 50.0 1.0
S1 1:SF4501 2.3 50.0 1.0
S2 1:SF4501 2.3 50.0 1.0
FE1 1:SF4501 2.5 50.0 1.0
FE2 1:SF4501 2.6 50.0 1.0
FE4 1:SF4501 2.7 50.0 1.0
CB 1:CYS400 3.9 50.0 1.0
S3 1:SF4501 3.9 50.0 1.0
CB 1:LEU402 4.0 50.0 1.0
N 1:LEU402 4.5 50.0 1.0
C 1:CYS400 4.6 50.0 1.0
O 1:CYS400 4.6 50.0 1.0
CA 1:LEU402 4.8 50.0 1.0
CA 1:CYS400 4.8 50.0 1.0
CB 1:ILE181 4.9 50.0 1.0

Iron binding site 4 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 4 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
FE4 1:SF4501 0.0 50.0 1.0
S2 1:SF4501 2.2 50.0 1.0
S3 1:SF4501 2.2 50.0 1.0
S1 1:SF4501 2.3 50.0 1.0
FE1 1:SF4501 2.4 50.0 1.0
FE3 1:SF4501 2.7 50.0 1.0
FE2 1:SF4501 2.7 50.0 1.0
CB 1:CYS353 2.8 50.0 1.0
N 1:CYS353 3.2 50.0 1.0
CA 1:CYS353 3.4 50.0 1.0
N 1:GLY354 3.8 50.0 1.0
S4 1:SF4501 3.8 50.0 1.0
N 1:LYS355 3.9 50.0 1.0
C 1:CYS353 3.9 50.0 1.0
C 1:SER352 4.3 50.0 1.0
N 1:CYS356 4.4 50.0 1.0
CB 1:LYS355 4.5 50.0 1.0
CA 1:LYS355 4.6 50.0 1.0
CA 1:SER352 4.7 50.0 1.0
C 1:GLY354 4.8 50.0 1.0
O 1:CYS353 4.9 50.0 1.0
CA 1:GLY354 4.9 50.0 1.0
O 1:GLU351 4.9 50.0 1.0
CB 1:CYS400 5.0 50.0 1.0

Iron binding site 5 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 5 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe201

b:50.0
occ:1.00
FE1 2:FES201 0.0 50.0 1.0
S1 2:FES201 2.2 50.0 1.0
S2 2:FES201 2.2 50.0 1.0
FE2 2:FES201 2.4 50.0 1.0
CB 2:CYS88 3.1 50.0 1.0
CB 2:CYS83 3.3 50.0 1.0
N 2:CYS88 3.8 50.0 1.0
CA 2:CYS88 4.0 50.0 1.0
O 2:THR85 4.1 50.0 1.0
N 2:LEU125 4.2 50.0 1.0
CA 2:CYS124 4.3 50.0 1.0
CB 2:THR85 4.5 50.0 1.0
CA 2:CYS83 4.6 50.0 1.0
CB 2:SER87 4.7 50.0 1.0
N 2:THR85 4.7 50.0 1.0
C 2:THR85 4.8 50.0 1.0
C 2:CYS83 4.8 50.0 1.0
C 2:CYS124 4.8 50.0 1.0
CB 2:VAL133 4.8 50.0 1.0
CB 2:CYS124 4.8 50.0 1.0
C 2:SER87 4.9 50.0 1.0
N 2:ALA84 4.9 50.0 1.0
CA 2:THR85 5.0 50.0 1.0
CA 2:CYS128 5.0 50.0 1.0

Iron binding site 6 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 6 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe201

b:50.0
occ:1.00
FE2 2:FES201 0.0 50.0 1.0
S1 2:FES201 2.2 50.0 1.0
S2 2:FES201 2.2 50.0 1.0
FE1 2:FES201 2.4 50.0 1.0
CB 2:CYS128 3.6 50.0 1.0
CA 2:CYS128 3.7 50.0 1.0
CB 2:CYS124 3.7 50.0 1.0
N 2:CYS128 3.8 50.0 1.0
N 2:LEU125 3.9 50.0 1.0
N 2:GLY126 3.9 50.0 1.0
N 2:SER127 3.9 50.0 1.0
CA 2:CYS124 3.9 50.0 1.0
CB 2:SER87 3.9 50.0 1.0
C 2:SER127 4.3 50.0 1.0
CA 2:GLY126 4.3 50.0 1.0
C 2:CYS124 4.4 50.0 1.0
N 2:CYS88 4.7 50.0 1.0
C 2:GLY126 4.7 50.0 1.0
C 2:LEU125 4.7 50.0 1.0
CA 2:SER127 4.8 50.0 1.0
O 2:SER127 4.8 50.0 1.0
CA 2:LEU125 4.9 50.0 1.0

Iron binding site 7 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 7 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
FE1 3:SF4801 0.0 50.0 1.0
S2 3:SF4801 2.1 50.0 1.0
S4 3:SF4801 2.3 50.0 1.0
S3 3:SF4801 2.3 50.0 1.0
FE4 3:SF4801 2.4 50.0 1.0
FE2 3:SF4801 2.5 50.0 1.0
FE3 3:SF4801 2.5 50.0 1.0
CB 3:CYS128 3.0 50.0 1.0
S1 3:SF4801 3.8 50.0 1.0
CA 3:CYS128 4.4 50.0 1.0
CB 3:GLN131 4.5 50.0 1.0
O 3:GLY125 4.8 50.0 1.0
CB 3:CYS122 5.0 50.0 1.0
N 3:GLN131 5.0 50.0 1.0

Iron binding site 8 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 8 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
FE2 3:SF4801 0.0 50.0 1.0
S1 3:SF4801 2.2 50.0 1.0
S4 3:SF4801 2.3 50.0 1.0
S3 3:SF4801 2.3 50.0 1.0
FE4 3:SF4801 2.4 50.0 1.0
FE3 3:SF4801 2.5 50.0 1.0
FE1 3:SF4801 2.5 50.0 1.0
N 3:CYS119 3.6 50.0 1.0
CA 3:CYS119 3.6 50.0 1.0
CB 3:CYS119 3.6 50.0 1.0
S2 3:SF4801 3.7 50.0 1.0
CB 3:CYS122 4.3 50.0 1.0
C 3:ASP118 4.5 50.0 1.0
N 3:ASP118 4.6 50.0 1.0
C 3:CYS119 5.0 50.0 1.0

Iron binding site 9 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 9 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
FE3 3:SF4801 0.0 50.0 1.0
S1 3:SF4801 2.2 50.0 1.0
S4 3:SF4801 2.3 50.0 1.0
S2 3:SF4801 2.3 50.0 1.0
FE2 3:SF4801 2.5 50.0 1.0
FE1 3:SF4801 2.5 50.0 1.0
FE4 3:SF4801 2.5 50.0 1.0
S3 3:SF4801 3.9 50.0 1.0
CB 3:ARG180 4.0 50.0 1.0
CA 3:ARG180 4.9 50.0 1.0
CB 3:CYS122 4.9 50.0 1.0

Iron binding site 10 out of 32 in 6zjn

Go back to Iron Binding Sites List in 6zjn
Iron binding site 10 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Respiratory Complex I From Thermus Thermophilus, Nadh Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
FE4 3:SF4801 0.0 50.0 1.0
S2 3:SF4801 2.2 50.0 1.0
S3 3:SF4801 2.2 50.0 1.0
S1 3:SF4801 2.3 50.0 1.0
FE1 3:SF4801 2.4 50.0 1.0
FE2 3:SF4801 2.4 50.0 1.0
FE3 3:SF4801 2.5 50.0 1.0
CB 3:CYS122 2.7 50.0 1.0
S4 3:SF4801 3.8 50.0 1.0
CA 3:CYS122 4.2 50.0 1.0
CB 3:CYS128 4.4 50.0 1.0
CA 3:CYS119 4.4 50.0 1.0
N 3:CYS119 4.5 50.0 1.0
N 3:GLY125 4.5 50.0 1.0
N 3:GLY233 4.8 50.0 1.0
CB 3:ARG180 4.9 50.0 1.0
C 3:ASP118 4.9 50.0 1.0
C 3:CYS122 4.9 50.0 1.0
CB 3:LYS124 4.9 50.0 1.0
CA 3:GLY125 5.0 50.0 1.0

Reference:

J.Gutierrez-Fernandez, K.Kaszuba, G.S.Minhas, R.Baradaran, M.Tambalo, D.T.Gallagher, L.A.Sazanov. Key Role of Quinone in the Mechanism of Respiratory Complex I. Nat Commun V. 11 4135 2020.
ISSN: ESSN 2041-1723
PubMed: 32811817
DOI: 10.1038/S41467-020-17957-0
Page generated: Wed Aug 6 17:30:21 2025

Last articles

Mg in 4E7Z
Mg in 4E6M
Mg in 4E7S
Mg in 4E7P
Mg in 4E7O
Mg in 4E5T
Mg in 4E6N
Mg in 4E6E
Mg in 4E4P
Mg in 4E4F
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy