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Iron in PDB 6zjy: Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State

Iron Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State (pdb code 6zjy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State, PDB code: 6zjy:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in 6zjy

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Iron binding site 1 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
 FE1 1:SF4501 0.0 50.0 1.0
CB 1:CYS356 1.4 50.0 1.0
N 1:CYS356 1.6 50.0 1.0
CA 1:CYS356 1.7 50.0 1.0
S2 1:SF4501 2.3 50.0 1.0
S3 1:SF4501 2.3 50.0 1.0
S4 1:SF4501 2.3 50.0 1.0
FE2 1:SF4501 2.7 50.0 1.0
FE3 1:SF4501 2.7 50.0 1.0
C 1:LYS355 2.8 50.0 1.0
FE4 1:SF4501 2.8 50.0 1.0
C 1:CYS356 3.0 50.0 1.0
O 1:LYS355 3.5 50.0 1.0
O 1:CYS356 3.5 50.0 1.0
CB 1:PHE399 3.5 50.0 1.0
CA 1:LYS355 3.7 50.0 1.0
N 1:LYS355 3.8 50.0 1.0
N 1:PHE399 3.8 50.0 1.0
S1 1:SF4501 3.9 50.0 1.0
CA 1:PHE399 4.0 50.0 1.0
N 1:CYS400 4.0 50.0 1.0
N 1:THR357 4.0 50.0 1.0
C 1:PHE399 4.0 50.0 1.0
CB 1:LYS355 4.1 50.0 1.0
CB 1:CYS353 4.4 50.0 1.0
C 1:GLY354 4.4 50.0 1.0
CB 1:CYS400 4.4 50.0 1.0
O 1:PHE399 4.8 50.0 1.0
N 1:GLY354 4.8 50.0 1.0
O 1:GLY354 4.8 50.0 1.0
CA 1:CYS400 4.8 50.0 1.0

Iron binding site 2 out of 32 in 6zjy

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Iron binding site 2 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
 FE2 1:SF4501 0.0 50.0 1.0
S1 1:SF4501 2.3 50.0 1.0
S3 1:SF4501 2.3 50.0 1.0
S4 1:SF4501 2.3 50.0 1.0
FE4 1:SF4501 2.6 50.0 1.0
FE1 1:SF4501 2.7 50.0 1.0
FE3 1:SF4501 2.7 50.0 1.0
CB 1:CYS356 2.7 50.0 1.0
N 1:CYS356 3.4 50.0 1.0
CB 1:CYS353 3.4 50.0 1.0
CA 1:CYS356 3.5 50.0 1.0
O 1:CYS356 3.6 50.0 1.0
N 1:CYS353 3.7 50.0 1.0
N 1:GLY354 3.7 50.0 1.0
S2 1:SF4501 3.8 50.0 1.0
C 1:CYS356 4.0 50.0 1.0
CA 1:CYS353 4.1 50.0 1.0
CB 1:CYS359 4.2 50.0 1.0
N 1:LYS355 4.4 50.0 1.0
C 1:CYS353 4.4 50.0 1.0
CA 1:GLY354 4.6 50.0 1.0
C 1:GLY354 4.6 50.0 1.0
C 1:LYS355 4.7 50.0 1.0
C 1:SER352 4.7 50.0 1.0
CB 1:CYS400 4.7 50.0 1.0
CA 1:SER352 4.8 50.0 1.0
CB 1:SER352 5.0 50.0 1.0

Iron binding site 3 out of 32 in 6zjy

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Iron binding site 3 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
 FE3 1:SF4501 0.0 50.0 1.0
CB 1:CYS400 2.2 50.0 1.0
S2 1:SF4501 2.3 50.0 1.0
S1 1:SF4501 2.3 50.0 1.0
S4 1:SF4501 2.3 50.0 1.0
FE4 1:SF4501 2.7 50.0 1.0
FE2 1:SF4501 2.7 50.0 1.0
FE1 1:SF4501 2.7 50.0 1.0
CA 1:CYS400 3.3 50.0 1.0
N 1:CYS400 3.4 50.0 1.0
CB 1:CYS353 3.5 50.0 1.0
CB 1:CYS356 3.5 50.0 1.0
S3 1:SF4501 3.9 50.0 1.0
C 1:PHE399 3.9 50.0 1.0
O 1:CYS400 4.0 50.0 1.0
C 1:CYS400 4.0 50.0 1.0
N 1:CYS356 4.0 50.0 1.0
O 1:PHE399 4.3 50.0 1.0
CA 1:CYS356 4.4 50.0 1.0
CA 1:PHE399 4.8 50.0 1.0
CA 1:CYS353 4.9 50.0 1.0
CB 1:PHE399 4.9 50.0 1.0
N 1:PHE399 4.9 50.0 1.0
C 1:LYS355 5.0 50.0 1.0

Iron binding site 4 out of 32 in 6zjy

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Iron binding site 4 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:50.0
occ:1.00
 FE4 1:SF4501 0.0 50.0 1.0
CB 1:CYS353 1.7 50.0 1.0
S1 1:SF4501 2.2 50.0 1.0
S3 1:SF4501 2.3 50.0 1.0
S2 1:SF4501 2.3 50.0 1.0
FE2 1:SF4501 2.6 50.0 1.0
FE3 1:SF4501 2.7 50.0 1.0
N 1:LYS355 2.7 50.0 1.0
FE1 1:SF4501 2.8 50.0 1.0
N 1:CYS356 2.8 50.0 1.0
CA 1:CYS353 2.9 50.0 1.0
N 1:GLY354 3.0 50.0 1.0
C 1:CYS353 3.1 50.0 1.0
CB 1:LYS355 3.2 50.0 1.0
CA 1:LYS355 3.2 50.0 1.0
C 1:LYS355 3.5 50.0 1.0
N 1:CYS353 3.5 50.0 1.0
C 1:GLY354 3.7 50.0 1.0
O 1:CYS353 3.8 50.0 1.0
CB 1:CYS356 3.9 50.0 1.0
CA 1:CYS356 3.9 50.0 1.0
S4 1:SF4501 3.9 50.0 1.0
CA 1:GLY354 4.0 50.0 1.0
O 1:CYS356 4.6 50.0 1.0
C 1:CYS356 4.6 50.0 1.0
O 1:GLY354 4.6 50.0 1.0
O 1:LYS355 4.7 50.0 1.0
CB 1:CYS400 4.7 50.0 1.0
C 1:SER352 4.8 50.0 1.0

Iron binding site 5 out of 32 in 6zjy

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Iron binding site 5 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe201

b:50.0
occ:1.00
 FE1 2:FES201 0.0 50.0 1.0
S1 2:FES201 2.2 50.0 1.0
S2 2:FES201 2.2 50.0 1.0
FE2 2:FES201 2.5 50.0 1.0
CB 2:CYS88 3.1 50.0 1.0
CB 2:CYS83 3.3 50.0 1.0
N 2:CYS88 3.9 50.0 1.0
CA 2:CYS88 4.1 50.0 1.0
O 2:THR85 4.1 50.0 1.0
N 2:LEU125 4.3 50.0 1.0
CA 2:CYS124 4.4 50.0 1.0
CA 2:CYS83 4.7 50.0 1.0
C 2:THR85 4.7 50.0 1.0
N 2:THR85 4.8 50.0 1.0
CB 2:CYS124 4.9 50.0 1.0
C 2:CYS83 4.9 50.0 1.0
CB 2:THR85 4.9 50.0 1.0
C 2:CYS124 4.9 50.0 1.0
CB 2:SER87 4.9 50.0 1.0

Iron binding site 6 out of 32 in 6zjy

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Iron binding site 6 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe201

b:50.0
occ:1.00
 FE2 2:FES201 0.0 50.0 1.0
S1 2:FES201 2.2 50.0 1.0
S2 2:FES201 2.2 50.0 1.0
FE1 2:FES201 2.5 50.0 1.0
CB 2:CYS128 3.7 50.0 1.0
CB 2:CYS124 3.7 50.0 1.0
CA 2:CYS128 3.8 50.0 1.0
N 2:GLY126 3.9 50.0 1.0
N 2:LEU125 3.9 50.0 1.0
N 2:CYS128 4.0 50.0 1.0
CA 2:CYS124 4.0 50.0 1.0
N 2:SER127 4.1 50.0 1.0
CA 1:PRO98 4.3 50.0 1.0
CB 2:SER87 4.3 50.0 1.0
CA 2:GLY126 4.3 50.0 1.0
C 2:CYS124 4.5 50.0 1.0
C 2:SER127 4.5 50.0 1.0
CB 1:PRO98 4.6 50.0 1.0
C 2:GLY126 4.8 50.0 1.0
C 2:LEU125 4.8 50.0 1.0
N 2:CYS88 4.9 50.0 1.0
CA 2:LEU125 4.9 50.0 1.0
N 1:GLY99 4.9 50.0 1.0
N 1:PRO98 5.0 50.0 1.0

Iron binding site 7 out of 32 in 6zjy

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Iron binding site 7 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
 FE1 3:SF4801 0.0 50.0 1.0
S2 3:SF4801 2.2 50.0 1.0
S3 3:SF4801 2.3 50.0 1.0
S4 3:SF4801 2.3 50.0 1.0
FE4 3:SF4801 2.6 50.0 1.0
FE3 3:SF4801 2.7 50.0 1.0
FE2 3:SF4801 2.8 50.0 1.0
CB 3:CYS128 2.9 50.0 1.0
CB 3:LYS124 3.6 50.0 1.0
S1 3:SF4801 4.0 50.0 1.0
CA 3:CYS128 4.1 50.0 1.0
N 3:GLY125 4.3 50.0 1.0
CB 3:CYS122 4.6 50.0 1.0
CA 3:LYS124 4.9 50.0 1.0
CB 3:GLN131 4.9 50.0 1.0
C 3:LYS124 4.9 50.0 1.0

Iron binding site 8 out of 32 in 6zjy

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Iron binding site 8 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
 FE2 3:SF4801 0.0 50.0 1.0
S1 3:SF4801 2.2 50.0 1.0
S4 3:SF4801 2.3 50.0 1.0
S3 3:SF4801 2.3 50.0 1.0
FE3 3:SF4801 2.6 50.0 1.0
FE4 3:SF4801 2.7 50.0 1.0
FE1 3:SF4801 2.8 50.0 1.0
CB 3:CYS122 3.2 50.0 1.0
CA 3:CYS119 3.7 50.0 1.0
S2 3:SF4801 3.9 50.0 1.0
CB 3:CYS119 4.0 50.0 1.0
N 3:CYS119 4.1 50.0 1.0
O 3:CYS119 4.7 50.0 1.0
CA 3:CYS122 4.7 50.0 1.0
CB 3:CYS128 4.7 50.0 1.0
C 3:CYS119 4.7 50.0 1.0
C 3:ASP118 4.9 50.0 1.0

Iron binding site 9 out of 32 in 6zjy

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Iron binding site 9 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
 FE3 3:SF4801 0.0 50.0 1.0
S1 3:SF4801 2.3 50.0 1.0
S4 3:SF4801 2.3 50.0 1.0
S2 3:SF4801 2.3 50.0 1.0
FE4 3:SF4801 2.6 50.0 1.0
FE2 3:SF4801 2.6 50.0 1.0
FE1 3:SF4801 2.7 50.0 1.0
S3 3:SF4801 3.7 50.0 1.0
CB 3:CYS122 4.3 50.0 1.0
O 3:PRO116 4.7 50.0 1.0

Iron binding site 10 out of 32 in 6zjy

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Iron binding site 10 out of 32 in the Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Respiratory Complex I From Thermus Thermophilus, Nad+ Dataset, Minor State within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:50.0
occ:1.00
 FE4 3:SF4801 0.0 50.0 1.0
S2 3:SF4801 2.2 50.0 1.0
S3 3:SF4801 2.3 50.0 1.0
S1 3:SF4801 2.4 50.0 1.0
CB 3:CYS122 2.4 50.0 1.0
FE3 3:SF4801 2.6 50.0 1.0
FE1 3:SF4801 2.6 50.0 1.0
FE2 3:SF4801 2.7 50.0 1.0
CA 3:CYS122 3.6 50.0 1.0
CB 3:LYS124 3.6 50.0 1.0
S4 3:SF4801 3.8 50.0 1.0
N 3:LYS124 4.2 50.0 1.0
C 3:CYS122 4.2 50.0 1.0
N 3:GLY125 4.3 50.0 1.0
N 3:ASP123 4.4 50.0 1.0
CA 3:LYS124 4.5 50.0 1.0
N 3:GLY233 4.8 50.0 1.0
N 3:CYS122 4.8 50.0 1.0
C 3:LYS124 5.0 50.0 1.0

Reference:

J.Gutierrez-Fernandez, K.Kaszuba, G.S.Minhas, R.Baradaran, M.Tambalo, D.T.Gallagher, L.A.Sazanov. Key Role of Quinone in the Mechanism of Respiratory Complex I. Nat Commun V. 11 4135 2020.
ISSN: ESSN 2041-1723
PubMed: 32811817
DOI: 10.1038/S41467-020-17957-0
Page generated: Wed Aug 7 18:43:56 2024

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