Atomistry » Iron » PDB 6zkh-6zzu » 6zkq
Atomistry »
  Iron »
    PDB 6zkh-6zzu »
      6zkq »

Iron in PDB 6zkq: Native Complex I, OPEN2

Enzymatic activity of Native Complex I, OPEN2

All present enzymatic activity of Native Complex I, OPEN2:
1.6.99.3; 7.1.1.2;

Other elements in 6zkq:

The structure of Native Complex I, OPEN2 also contains other interesting chemical elements:

Potassium (K) 1 atom
Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Native Complex I, OPEN2 (pdb code 6zkq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Native Complex I, OPEN2, PDB code: 6zkq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 1 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:22.1
occ:1.00
FE1 1:SF4500 0.0 22.1 1.0
S3 1:SF4500 2.3 32.5 1.0
S2 1:SF4500 2.3 48.6 1.0
S4 1:SF4500 2.3 0.8 1.0
SG 1:CYS365 2.3 18.5 1.0
FE2 1:SF4500 2.7 37.7 1.0
FE3 1:SF4500 2.7 27.5 1.0
FE4 1:SF4500 2.8 32.2 1.0
CB 1:CYS365 2.8 11.4 1.0
OG 1:SER358 3.5 23.7 1.0
S1 1:SF4500 4.2 93.8 1.0
CD2 1:LEU407 4.2 33.9 1.0
CA 1:CYS365 4.3 21.2 1.0
C 1:CYS365 4.6 23.9 1.0
N 1:CYS359 4.7 23.1 1.0
CB 1:SER358 4.7 24.9 1.0
N 1:ARG366 4.8 22.6 1.0
CB 1:LEU407 4.8 29.0 1.0
N 1:GLY360 4.9 15.8 1.0
N 1:GLY408 5.0 32.7 1.0
CA 1:SER358 5.0 28.2 1.0
SG 1:CYS362 5.0 33.0 1.0

Iron binding site 2 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 2 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:37.7
occ:1.00
FE2 1:SF4500 0.0 37.7 1.0
S3 1:SF4500 2.3 32.5 1.0
S1 1:SF4500 2.3 93.8 1.0
S4 1:SF4500 2.4 0.8 1.0
FE3 1:SF4500 2.5 27.5 1.0
FE4 1:SF4500 2.5 32.2 1.0
FE1 1:SF4500 2.7 22.1 1.0
SG 1:CYS362 3.0 33.0 1.0
N 1:CYS362 3.4 19.1 1.0
S2 1:SF4500 3.8 48.6 1.0
CB 1:CYS362 3.8 42.4 1.0
CA 1:CYS362 4.0 25.6 1.0
N 1:GLN361 4.2 20.7 1.0
O 1:CYS362 4.2 33.5 1.0
CB 1:GLN361 4.2 22.7 1.0
CB 1:CYS365 4.2 11.4 1.0
C 1:GLN361 4.4 21.3 1.0
CA 1:GLN361 4.4 41.1 1.0
C 1:CYS362 4.5 22.7 1.0
CD1 1:ILE404 4.6 18.5 1.0
SG 1:CYS365 4.6 18.5 1.0
CB 1:ILE404 4.7 27.2 1.0
CG1 1:ILE404 4.8 14.6 1.0
N 1:ILE404 4.8 26.9 1.0
SG 1:CYS359 4.8 35.8 1.0

Iron binding site 3 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 3 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:27.5
occ:1.00
FE3 1:SF4500 0.0 27.5 1.0
S4 1:SF4500 2.3 0.8 1.0
S1 1:SF4500 2.3 93.8 1.0
S2 1:SF4500 2.4 48.6 1.0
FE4 1:SF4500 2.4 32.2 1.0
FE2 1:SF4500 2.5 37.7 1.0
FE1 1:SF4500 2.7 22.1 1.0
SG 1:CYS359 2.9 35.8 1.0
S3 1:SF4500 3.7 32.5 1.0
CB 1:CYS359 3.9 21.2 1.0
N 1:CYS359 3.9 23.1 1.0
CD 1:PRO203 4.0 22.5 1.0
N 1:GLN361 4.1 20.7 1.0
N 1:GLY360 4.2 15.8 1.0
CB 1:GLN361 4.3 22.7 1.0
CA 1:CYS359 4.3 26.1 1.0
CG 1:PRO203 4.4 24.9 1.0
C 1:CYS359 4.5 20.2 1.0
CD1 1:ILE185 4.7 25.4 1.0
CG1 1:ILE185 4.7 23.4 1.0
SG 1:CYS405 4.7 45.0 1.0
CA 1:GLN361 4.7 41.1 1.0
N 1:CYS362 4.9 19.1 1.0
OG 1:SER358 4.9 23.7 1.0
SG 1:CYS365 5.0 18.5 1.0
OE1 1:GLN361 5.0 27.0 1.0
C 1:SER358 5.0 33.2 1.0

Iron binding site 4 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 4 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:32.2
occ:1.00
FE4 1:SF4500 0.0 32.2 1.0
S2 1:SF4500 2.3 48.6 1.0
S1 1:SF4500 2.3 93.8 1.0
S3 1:SF4500 2.4 32.5 1.0
FE3 1:SF4500 2.4 27.5 1.0
FE2 1:SF4500 2.5 37.7 1.0
FE1 1:SF4500 2.8 22.1 1.0
SG 1:CYS405 3.0 45.0 1.0
N 1:CYS405 3.7 19.7 1.0
S4 1:SF4500 3.8 0.8 1.0
CB 1:CYS405 3.9 34.7 1.0
CA 1:CYS405 4.2 32.7 1.0
CG 1:PRO203 4.3 24.9 1.0
O 1:CYS405 4.4 50.7 1.0
C 1:CYS405 4.5 34.7 1.0
CB 1:ILE404 4.5 27.2 1.0
N 1:ILE404 4.6 26.9 1.0
C 1:ILE404 4.7 25.1 1.0
CD 1:PRO203 4.7 22.5 1.0
CB 1:LEU407 4.8 29.0 1.0
CD1 1:ILE185 4.8 25.4 1.0
CA 1:ILE404 4.8 25.2 1.0
SG 1:CYS362 4.9 33.0 1.0
SG 1:CYS365 4.9 18.5 1.0
CB 1:CYS365 5.0 11.4 1.0

Iron binding site 5 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 5 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe300

b:0.4
occ:1.00
FE1 2:FES300 0.0 0.4 1.0
S1 2:FES300 2.2 68.5 1.0
S2 2:FES300 2.2 59.9 1.0
SG 2:CYS103 2.3 77.2 1.0
SG 2:CYS108 2.3 73.8 1.0
FE2 2:FES300 3.0 66.3 1.0
CB 2:CYS103 3.3 49.0 1.0
CB 2:CYS108 3.3 54.0 1.0
OG1 2:THR105 3.9 63.6 1.0
N 2:CYS108 4.2 38.2 1.0
CA 2:CYS108 4.3 39.7 1.0
O 2:CYS103 4.4 38.3 1.0
C 2:CYS103 4.5 29.8 1.0
CA 2:CYS103 4.5 36.4 1.0
CA 2:CYS144 4.5 39.0 1.0
N 2:LEU145 4.6 29.4 1.0
SD 2:MET153 4.7 67.9 1.0
SG 2:CYS144 4.7 67.3 1.0
N 2:THR105 4.8 34.3 1.0
C 2:PRO107 4.8 39.0 1.0
SG 2:CYS148 4.9 73.5 1.0
CG 2:MET153 4.9 55.4 1.0
CB 2:CYS144 5.0 57.2 1.0

Iron binding site 6 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 6 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe300

b:66.3
occ:1.00
FE2 2:FES300 0.0 66.3 1.0
S2 2:FES300 2.2 59.9 1.0
S1 2:FES300 2.2 68.5 1.0
SG 2:CYS148 2.3 73.5 1.0
SG 2:CYS144 2.3 67.3 1.0
FE1 2:FES300 3.0 0.4 1.0
CB 2:CYS144 3.5 57.2 1.0
CB 2:CYS148 3.7 43.6 1.0
N 2:GLY146 3.9 32.8 1.0
CA 2:CYS144 3.9 39.0 1.0
CA 2:CYS148 4.1 42.6 1.0
N 2:LEU145 4.1 29.4 1.0
OG1 2:THR105 4.2 63.6 1.0
N 2:CYS148 4.2 45.1 1.0
N 2:ALA147 4.3 40.8 1.0
C 2:CYS144 4.3 31.6 1.0
N 1:GLY103 4.4 31.9 1.0
CA 2:GLY146 4.4 31.9 1.0
SG 2:CYS103 4.4 77.2 1.0
CA 1:PRO102 4.6 39.9 1.0
C 2:ALA147 4.8 46.0 1.0
CB 2:PRO107 4.8 37.5 1.0
SG 2:CYS108 4.8 73.8 1.0
C 2:GLY146 4.8 38.5 1.0
C 2:LEU145 4.9 35.3 1.0
CG 2:PRO107 4.9 36.2 1.0

Iron binding site 7 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 7 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:75.6
occ:1.00
FE1 3:SF4801 0.0 75.6 1.0
S3 3:SF4801 2.3 75.6 1.0
S2 3:SF4801 2.3 75.6 1.0
S4 3:SF4801 2.3 75.6 1.0
SG 3:CYS114 2.3 54.2 1.0
FE2 3:SF4801 2.7 75.6 1.0
FE4 3:SF4801 2.7 75.6 1.0
FE3 3:SF4801 2.7 75.6 1.0
CB 3:CYS114 3.3 24.8 1.0
S1 3:SF4801 3.9 75.6 1.0
CG 3:GLN117 4.0 23.4 1.0
NE2 3:HIS101 4.1 46.9 1.0
NE2 3:GLN117 4.3 18.0 1.0
CB 3:LEU116 4.4 14.9 1.0
CD 3:GLN117 4.5 18.0 1.0
N 3:GLN117 4.6 56.2 1.0
CA 3:CYS114 4.7 22.8 1.0
N 3:GLY206 4.7 18.8 1.0
SG 3:CYS108 4.8 55.9 1.0
SG 3:CYS105 4.8 29.1 1.0
CD2 3:LEU116 4.8 19.0 1.0
CE1 3:HIS101 4.8 59.5 1.0
CA 3:VAL205 4.9 14.6 1.0
CG 3:GLN110 4.9 18.8 1.0
CB 3:GLN110 4.9 21.9 1.0
CB 3:GLN117 5.0 28.8 1.0

Iron binding site 8 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 8 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:75.6
occ:1.00
FE2 3:SF4801 0.0 75.6 1.0
S4 3:SF4801 2.3 75.6 1.0
S1 3:SF4801 2.3 75.6 1.0
S3 3:SF4801 2.3 75.6 1.0
SG 3:CYS105 2.3 29.1 1.0
FE3 3:SF4801 2.7 75.6 1.0
FE1 3:SF4801 2.7 75.6 1.0
FE4 3:SF4801 2.7 75.6 1.0
NE2 3:GLN117 3.3 18.0 1.0
CB 3:CYS105 3.4 10.5 1.0
CA 3:CYS105 3.5 12.2 1.0
N 3:CYS105 3.8 9.9 1.0
S2 3:SF4801 3.9 75.6 1.0
CE 4:MET342 4.1 10.1 1.0
CG 3:GLN117 4.1 23.4 1.0
CD 3:GLN117 4.1 18.0 1.0
NE2 3:HIS101 4.2 46.9 1.0
C 3:ASP104 4.7 12.8 1.0
CD2 3:HIS101 4.7 40.2 1.0
SG 3:CYS108 4.8 55.9 1.0
SG 3:CYS114 4.8 54.2 1.0
CB 3:CYS108 4.9 50.7 1.0
C 3:CYS105 4.9 15.5 1.0
CG1 4:ILE346 4.9 18.3 1.0

Iron binding site 9 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 9 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:75.6
occ:1.00
FE3 3:SF4801 0.0 75.6 1.0
NE2 3:HIS101 1.9 46.9 1.0
S1 3:SF4801 2.3 75.6 1.0
S2 3:SF4801 2.3 75.6 1.0
S4 3:SF4801 2.3 75.6 1.0
FE2 3:SF4801 2.7 75.6 1.0
FE1 3:SF4801 2.7 75.6 1.0
FE4 3:SF4801 2.7 75.6 1.0
CE1 3:HIS101 2.8 59.5 1.0
CD2 3:HIS101 2.9 40.2 1.0
S3 3:SF4801 3.9 75.6 1.0
ND1 3:HIS101 3.9 34.5 1.0
CG 3:HIS101 4.0 52.6 1.0
CD2 3:LEU116 4.5 19.0 1.0
CE 4:MET342 4.5 10.1 1.0
O 3:PRO102 4.5 27.7 1.0
CG 3:ARG152 4.7 43.5 1.0
CB 3:ARG152 4.7 33.8 1.0
SG 3:CYS105 4.7 29.1 1.0
SG 3:CYS114 4.8 54.2 1.0
SG 3:CYS108 4.8 55.9 1.0
CD 3:ARG152 4.9 61.6 1.0
N 3:GLY206 5.0 18.8 1.0

Iron binding site 10 out of 28 in 6zkq

Go back to Iron Binding Sites List in 6zkq
Iron binding site 10 out of 28 in the Native Complex I, OPEN2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Native Complex I, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:75.6
occ:1.00
FE4 3:SF4801 0.0 75.6 1.0
S2 3:SF4801 2.3 75.6 1.0
S3 3:SF4801 2.3 75.6 1.0
S1 3:SF4801 2.3 75.6 1.0
SG 3:CYS108 2.3 55.9 1.0
FE1 3:SF4801 2.7 75.6 1.0
FE2 3:SF4801 2.7 75.6 1.0
FE3 3:SF4801 2.7 75.6 1.0
CB 3:CYS108 3.1 50.7 1.0
S4 3:SF4801 3.9 75.6 1.0
N 3:GLY206 4.2 18.8 1.0
CB 3:GLN110 4.4 21.9 1.0
CA 3:GLY206 4.4 21.6 1.0
CD 3:ARG152 4.5 61.6 1.0
NE2 3:HIS101 4.6 46.9 1.0
CA 3:CYS105 4.6 12.2 1.0
CA 3:CYS108 4.6 15.3 1.0
N 3:GLY111 4.7 11.3 1.0
N 3:CYS105 4.7 9.9 1.0
SG 3:CYS114 4.7 54.2 1.0
SG 3:CYS105 4.8 29.1 1.0
C 3:ASP104 4.9 12.8 1.0
C 3:GLN110 4.9 15.2 1.0
O 3:ASP104 4.9 15.7 1.0
NE 3:ARG152 4.9 51.4 1.0

Reference:

D.Kampjut, L.A.Sazanov. The Coupling Mechanism of Mammalian Respiratory Complex I. Science V. 370 2020.
ISSN: ESSN 1095-9203
PubMed: 32972993
DOI: 10.1126/SCIENCE.ABC4209
Page generated: Wed Aug 7 20:22:20 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy