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Iron in PDB 7ai8: Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source

Enzymatic activity of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source

All present enzymatic activity of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source:
1.17.4.1;

Protein crystallography data

The structure of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ai8 was solved by O.Aurelius, J.John, I.Martiel, C.Padeste, A.Karpik, C.Y.Huang, M.Hogbom, M.Wang, M.Marsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.97 / 2.10
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.35, 90.35, 208.55, 90, 90, 120
R / Rfree (%) 19 / 21.9

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source (pdb code 7ai8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ai8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7ai8

Go back to Iron Binding Sites List in 7ai8
Iron binding site 1 out of 2 in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:40.7
occ:1.00
 OE2 A:GLU204 2.0 44.5 1.0
O A:HOH545 2.0 34.6 1.0
O A:HOH550 2.1 38.2 1.0
OE1 A:GLU238 2.2 44.9 1.0
ND1 A:HIS241 2.3 39.6 1.0
OE2 A:GLU115 2.3 48.2 1.0
CD A:GLU204 3.0 39.7 1.0
CD A:GLU238 3.0 46.9 1.0
CD A:GLU115 3.1 43.8 1.0
OE1 A:GLU115 3.2 39.3 1.0
CE1 A:HIS241 3.2 41.1 1.0
OE2 A:GLU238 3.2 43.5 1.0
FE A:FE402 3.3 40.0 1.0
CG A:HIS241 3.3 43.3 1.0
CG A:GLU204 3.6 39.1 1.0
CB A:HIS241 3.6 42.6 1.0
OE1 A:GLU204 4.0 39.9 1.0
NE1 A:TRP111 4.0 41.2 1.0
OD1 A:ASP84 4.3 43.2 1.0
NE2 A:HIS241 4.3 36.9 1.0
O A:HOH564 4.3 46.1 1.0
CB A:GLU204 4.4 43.3 1.0
CD2 A:HIS241 4.4 37.8 1.0
CG A:GLU238 4.4 39.9 1.0
NE2 A:GLN87 4.4 40.9 1.0
CG A:GLU115 4.5 39.5 1.0
CA A:GLU238 4.5 42.3 1.0
CD1 A:TRP111 4.6 36.4 1.0
ND1 A:HIS118 4.8 38.9 1.0
CE1 A:HIS118 4.8 43.5 1.0
CB A:GLU238 4.8 41.5 1.0
OD2 A:ASP84 5.0 41.2 1.0
CG A:GLN87 5.0 40.3 1.0

Iron binding site 2 out of 2 in 7ai8

Go back to Iron Binding Sites List in 7ai8
Iron binding site 2 out of 2 in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:40.0
occ:1.00
 O A:HOH550 1.9 38.2 1.0
OD2 A:ASP84 2.0 41.2 1.0
OE1 A:GLU115 2.2 39.3 1.0
ND1 A:HIS118 2.2 38.9 1.0
O A:HOH564 2.4 46.1 1.0
CG A:ASP84 2.7 44.5 1.0
OD1 A:ASP84 2.8 43.2 1.0
O A:HOH545 2.9 34.6 1.0
CE1 A:HIS118 3.1 43.5 1.0
CG A:HIS118 3.3 37.6 1.0
CD A:GLU115 3.3 43.8 1.0
FE A:FE401 3.3 40.7 1.0
CB A:HIS118 3.7 38.0 1.0
OE2 A:GLU115 3.8 48.2 1.0
OE2 A:GLU238 4.0 43.5 1.0
CB A:ASP84 4.1 42.6 1.0
NE2 A:HIS118 4.3 38.4 1.0
CG2 A:ILE234 4.3 40.4 1.0
CZ A:PHE208 4.4 43.8 1.0
CD2 A:HIS118 4.4 41.2 1.0
CE1 A:PHE208 4.5 47.9 1.0
CE1 A:HIS241 4.5 41.1 1.0
ND1 A:HIS241 4.5 39.6 1.0
CD A:GLU238 4.6 46.9 1.0
CG A:GLU115 4.6 39.5 1.0
OE1 A:GLU238 4.6 44.9 1.0
CA A:GLU115 4.6 45.0 1.0
CB A:GLU115 4.8 37.3 1.0
CE2 A:PHE208 4.9 44.9 1.0
OH A:TYR122 4.9 52.5 1.0

Reference:

I.Martiel, J.H.Beale, A.Karpik, C.Y.Huang, L.Vera, N.Olieric, M.Wranik, C.J.Tsai, J.Muhle, O.Aurelius, J.John, M.Hogbom, M.Wang, M.Marsh, C.Padeste. Versatile Microporous Polymer-Based Supports For Serial Macromolecular Crystallography Acta Crystallogr.,Sect.D 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321007324
Page generated: Wed Aug 7 22:30:21 2024

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