Atomistry » Iron » PDB 7ai8-7bha » 7ai9
Atomistry »
  Iron »
    PDB 7ai8-7bha »
      7ai9 »

Iron in PDB 7ai9: Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source

Enzymatic activity of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source

All present enzymatic activity of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source:
1.17.4.1;

Protein crystallography data

The structure of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ai9 was solved by O.Aurelius, J.John, I.Martiel, C.Padeste, A.Karpik, C.Y.Huang, M.Hogbom, M.Wang, M.Marsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.26 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.51, 90.51, 207.87, 90, 90, 120
R / Rfree (%) 17 / 19.1

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source (pdb code 7ai9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ai9:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7ai9

Go back to Iron Binding Sites List in 7ai9
Iron binding site 1 out of 2 in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:57.8
occ:1.00
 O A:HOH565 1.9 52.6 1.0
OE2 A:GLU204 2.0 62.3 1.0
O A:HOH574 2.0 49.5 1.0
OE1 A:GLU238 2.1 58.1 1.0
OE2 A:GLU115 2.2 66.7 1.0
ND1 A:HIS241 2.2 62.8 1.0
CD A:GLU204 3.0 61.2 1.0
CD A:GLU238 3.0 71.8 1.0
CE1 A:HIS241 3.0 62.2 1.0
CD A:GLU115 3.0 62.9 1.0
CG A:HIS241 3.2 58.8 1.0
OE2 A:GLU238 3.2 70.0 1.0
OE1 A:GLU115 3.3 62.5 1.0
FE A:FE402 3.4 59.4 1.0
CG A:GLU204 3.6 65.7 1.0
CB A:HIS241 3.6 64.2 1.0
OE1 A:GLU204 4.0 68.9 1.0
NE1 A:TRP111 4.0 61.9 1.0
NE2 A:HIS241 4.2 57.5 1.0
CD2 A:HIS241 4.3 53.8 1.0
CG A:GLU238 4.3 58.0 1.0
O A:HOH562 4.3 68.1 1.0
OD1 A:ASP84 4.4 63.7 1.0
CB A:GLU204 4.4 66.5 1.0
CG A:GLU115 4.4 53.7 1.0
CA A:GLU238 4.5 56.7 1.0
NE2 A:GLN87 4.5 64.4 1.0
CD1 A:TRP111 4.6 52.7 1.0
CB A:GLU238 4.7 58.0 1.0
ND1 A:HIS118 4.7 56.8 1.0
CE1 A:HIS118 4.7 61.5 1.0
CG A:GLN87 4.9 60.8 1.0

Iron binding site 2 out of 2 in 7ai9

Go back to Iron Binding Sites List in 7ai9
Iron binding site 2 out of 2 in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:59.4
occ:1.00
 O A:HOH574 1.9 49.5 1.0
OD2 A:ASP84 1.9 58.6 1.0
OE1 A:GLU115 2.1 62.5 1.0
ND1 A:HIS118 2.2 56.8 1.0
O A:HOH562 2.2 68.1 1.0
CG A:ASP84 2.6 64.2 1.0
OD1 A:ASP84 2.8 63.7 1.0
O A:HOH565 2.8 52.6 1.0
CE1 A:HIS118 3.1 61.5 1.0
CD A:GLU115 3.2 62.9 1.0
CG A:HIS118 3.2 53.8 1.0
FE A:FE401 3.4 57.8 1.0
CB A:HIS118 3.6 58.3 1.0
OE2 A:GLU115 3.6 66.7 1.0
OE2 A:GLU238 3.9 70.0 1.0
CB A:ASP84 4.1 57.3 1.0
NE2 A:HIS118 4.2 55.1 1.0
CD2 A:HIS118 4.3 55.4 1.0
CZ A:PHE208 4.3 64.4 1.0
CG2 A:ILE234 4.4 54.4 1.0
CE1 A:HIS241 4.4 62.2 1.0
CG A:GLU115 4.5 53.7 1.0
CE2 A:PHE208 4.5 63.2 1.0
ND1 A:HIS241 4.5 62.8 1.0
CD A:GLU238 4.6 71.8 1.0
CA A:GLU115 4.6 61.3 1.0
OE1 A:GLU238 4.6 58.1 1.0
CB A:GLU115 4.7 59.1 1.0
OH A:TYR122 4.7 74.8 1.0
CE1 A:PHE208 4.8 57.8 1.0

Reference:

I.Martiel, J.H.Beale, A.Karpik, C.Y.Huang, L.Vera, N.Olieric, M.Wranik, C.J.Tsai, J.Muhle, O.Aurelius, J.John, M.Hogbom, M.Wang, M.Marsh, C.Padeste. Versatile Microporous Polymer-Based Supports For Serial Macromolecular Crystallography Acta Crystallogr.,Sect.D 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321007324
Page generated: Wed Aug 7 22:30:21 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy