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Iron in PDB 7dio: Structure of PFGRX1 with Iron

Enzymatic activity of Structure of PFGRX1 with Iron

All present enzymatic activity of Structure of PFGRX1 with Iron:
1.8.4.2;

Protein crystallography data

The structure of Structure of PFGRX1 with Iron, PDB code: 7dio was solved by Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.07 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.142, 48.142, 82.832, 90, 90, 120
R / Rfree (%) 14.5 / 20.5

Iron Binding Sites:

The binding sites of Iron atom in the Structure of PFGRX1 with Iron (pdb code 7dio). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of PFGRX1 with Iron, PDB code: 7dio:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7dio

Go back to Iron Binding Sites List in 7dio
Iron binding site 1 out of 2 in the Structure of PFGRX1 with Iron


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of PFGRX1 with Iron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:25.1
occ:0.47
OE1 A:GLU51 1.9 22.5 1.0
O A:HOH396 2.1 36.0 0.9
O A:HOH380 2.2 33.3 0.8
O A:HOH369 2.3 32.8 1.0
O A:HOH327 2.3 41.9 1.0
NE2 A:HIS49 2.4 29.0 1.0
CE1 A:HIS49 2.9 31.1 1.0
CD A:GLU51 3.0 24.3 1.0
OE2 A:GLU51 3.3 20.6 1.0
CD2 A:HIS49 3.6 28.9 1.0
O A:HOH357 4.1 33.0 1.0
ND1 A:HIS49 4.2 29.6 1.0
CG A:GLU51 4.3 22.4 1.0
O A:VAL50 4.4 16.6 1.0
O A:HOH392 4.5 28.6 0.5
CB A:GLU51 4.5 15.8 1.0
O A:HOH392 4.5 30.3 0.5
CG A:HIS49 4.5 29.2 1.0
CA A:GLU51 4.6 17.2 1.0
O A:HOH397 5.0 50.3 1.0
CD1 A:ILE15 5.0 21.7 1.0

Iron binding site 2 out of 2 in 7dio

Go back to Iron Binding Sites List in 7dio
Iron binding site 2 out of 2 in the Structure of PFGRX1 with Iron


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of PFGRX1 with Iron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe204

b:78.8
occ:0.50
O A:HOH389 2.6 24.2 0.4
O A:HOH390 2.9 57.9 0.9
OE1 A:GLU28 2.9 45.6 1.0
O A:HOH410 3.2 61.9 1.0
CD A:GLU28 4.0 49.3 1.0
OE2 A:GLU28 4.4 61.8 1.0

Reference:

Y.Manickam, A.Sharma. Interaction of Metals with PFGRX1 To Be Published.
Page generated: Thu Aug 8 03:59:17 2024

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