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Iron in PDB 7dz8: State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii

Enzymatic activity of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii

All present enzymatic activity of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii:
1.97.1.12;

Other elements in 7dz8:

The structure of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii also contains other interesting chemical elements:

Magnesium (Mg) 334 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii (pdb code 7dz8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii, PDB code: 7dz8:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 7dz8

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Iron binding site 1 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:24.6
occ:1.00
 FE1 A:SF4853 0.0 24.6 1.0
SG B:CYS560 2.1 24.2 1.0
S3 A:SF4853 2.2 24.6 1.0
S4 A:SF4853 2.2 24.6 1.0
S2 A:SF4853 2.3 24.6 1.0
FE4 A:SF4853 2.7 24.6 1.0
FE2 A:SF4853 2.7 24.6 1.0
FE3 A:SF4853 2.7 24.6 1.0
CB B:CYS560 3.1 24.2 1.0
S1 A:SF4853 3.8 24.6 1.0
CD1 B:ILE703 4.2 22.2 1.0
SG A:CYS575 4.3 22.4 1.0
N A:PRO578 4.3 24.0 1.0
CB A:PRO578 4.4 24.0 1.0
CD A:PRO578 4.4 24.0 1.0
SG A:CYS584 4.5 21.1 1.0
CA B:CYS560 4.5 24.2 1.0
CA A:PRO578 4.5 24.0 1.0
C A:GLY577 4.6 23.6 1.0
SG B:CYS569 4.6 23.3 1.0
O A:GLY577 4.8 23.6 1.0
N B:GLY562 4.8 23.7 1.0
CG A:PRO578 4.9 24.0 1.0
CA B:GLY562 4.9 23.7 1.0
N B:CYS560 4.9 24.2 1.0
C B:GLY562 5.0 23.7 1.0

Iron binding site 2 out of 12 in 7dz8

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Iron binding site 2 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:24.6
occ:1.00
 FE2 A:SF4853 0.0 24.6 1.0
SG A:CYS584 2.2 21.1 1.0
S3 A:SF4853 2.2 24.6 1.0
S4 A:SF4853 2.2 24.6 1.0
S1 A:SF4853 2.3 24.6 1.0
CB A:CYS584 2.6 21.1 1.0
FE1 A:SF4853 2.7 24.6 1.0
FE4 A:SF4853 2.7 24.6 1.0
FE3 A:SF4853 2.7 24.6 1.0
S2 A:SF4853 3.8 24.6 1.0
CA A:CYS584 3.8 21.1 1.0
CD1 B:ILE703 4.2 22.2 1.0
N A:CYS584 4.2 21.1 1.0
SG A:CYS575 4.3 22.4 1.0
CE3 B:TRP668 4.4 20.6 1.0
CB A:CYS575 4.5 22.4 1.0
SG B:CYS569 4.6 23.3 1.0
CZ3 B:TRP668 4.8 20.6 1.0
NH2 A:ARG724 4.8 20.0 1.0
SG B:CYS560 4.8 24.2 1.0
CG1 B:ILE703 4.9 22.2 1.0
CG2 B:ILE703 5.0 22.2 1.0

Iron binding site 3 out of 12 in 7dz8

Go back to Iron Binding Sites List in 7dz8
Iron binding site 3 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:24.6
occ:1.00
 FE3 A:SF4853 0.0 24.6 1.0
SG B:CYS569 2.1 23.3 1.0
S1 A:SF4853 2.2 24.6 1.0
S2 A:SF4853 2.2 24.6 1.0
S4 A:SF4853 2.3 24.6 1.0
FE4 A:SF4853 2.7 24.6 1.0
FE1 A:SF4853 2.7 24.6 1.0
FE2 A:SF4853 2.7 24.6 1.0
CB B:CYS569 2.8 23.3 1.0
CA B:CYS569 3.4 23.3 1.0
S3 A:SF4853 3.8 24.6 1.0
N B:CYS569 4.0 23.3 1.0
CB B:CYS560 4.2 24.2 1.0
SG B:CYS560 4.2 24.2 1.0
C B:THR568 4.6 24.2 1.0
CZ3 B:TRP668 4.6 20.6 1.0
SG A:CYS575 4.7 22.4 1.0
CD1 A:ILE720 4.7 21.2 1.0
C B:CYS569 4.8 23.3 1.0
O B:THR568 4.8 24.2 1.0
SG A:CYS584 4.9 21.1 1.0

Iron binding site 4 out of 12 in 7dz8

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Iron binding site 4 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:24.6
occ:1.00
 FE4 A:SF4853 0.0 24.6 1.0
SG A:CYS575 2.0 22.4 1.0
S2 A:SF4853 2.2 24.6 1.0
S1 A:SF4853 2.2 24.6 1.0
S3 A:SF4853 2.3 24.6 1.0
FE3 A:SF4853 2.7 24.6 1.0
FE1 A:SF4853 2.7 24.6 1.0
FE2 A:SF4853 2.7 24.6 1.0
CB A:CYS575 3.2 22.4 1.0
S4 A:SF4853 3.8 24.6 1.0
SG B:CYS569 4.0 23.3 1.0
CB A:CYS584 4.3 21.1 1.0
SG B:CYS560 4.4 24.2 1.0
CA A:CYS575 4.6 22.4 1.0
SG A:CYS584 4.6 21.1 1.0
N B:PRO563 4.6 23.8 1.0
CD1 A:ILE720 4.7 21.2 1.0
C B:GLY562 4.7 23.7 1.0
CD B:PRO563 4.8 23.8 1.0
CB B:PRO563 4.9 23.8 1.0
CA A:CYS584 4.9 21.1 1.0
N A:CYS575 4.9 22.4 1.0
CA B:PRO563 4.9 23.8 1.0
C A:GLY577 4.9 23.6 1.0
O B:GLY562 4.9 23.7 1.0
O A:GLY577 4.9 23.6 1.0

Iron binding site 5 out of 12 in 7dz8

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Iron binding site 5 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:29.0
occ:1.00
 FE1 C:SF4101 0.0 29.0 1.0
SG C:CYS54 2.1 26.8 1.0
S3 C:SF4101 2.2 29.0 1.0
S2 C:SF4101 2.2 29.0 1.0
S4 C:SF4101 2.3 29.0 1.0
FE4 C:SF4101 2.7 29.0 1.0
FE2 C:SF4101 2.7 29.0 1.0
FE3 C:SF4101 2.7 29.0 1.0
CB C:CYS54 3.1 26.8 1.0
CG2 C:VAL67 3.8 26.5 1.0
N C:CYS54 3.8 26.8 1.0
S1 C:SF4101 3.8 29.0 1.0
CA C:CYS54 4.1 26.8 1.0
N C:LYS52 4.1 25.5 1.0
CA C:LYS52 4.3 25.5 1.0
SG C:CYS48 4.4 28.4 1.0
N C:ARG53 4.5 25.8 1.0
SG C:CYS51 4.6 25.3 1.0
SG C:CYS21 4.7 28.8 1.0
C C:LYS52 4.7 25.5 1.0
CD1 C:LEU26 4.7 29.4 1.0
C C:ARG53 5.0 25.8 1.0

Iron binding site 6 out of 12 in 7dz8

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Iron binding site 6 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:29.0
occ:1.00
 FE2 C:SF4101 0.0 29.0 1.0
SG C:CYS51 2.1 25.3 1.0
S1 C:SF4101 2.2 29.0 1.0
S4 C:SF4101 2.2 29.0 1.0
S3 C:SF4101 2.2 29.0 1.0
FE3 C:SF4101 2.7 29.0 1.0
FE1 C:SF4101 2.7 29.0 1.0
FE4 C:SF4101 2.7 29.0 1.0
N C:CYS51 3.6 25.3 1.0
N C:LYS52 3.6 25.5 1.0
CB C:CYS51 3.6 25.3 1.0
S2 C:SF4101 3.8 29.0 1.0
CA C:CYS51 4.0 25.3 1.0
CD C:PRO22 4.0 27.7 1.0
N C:ARG53 4.1 25.8 1.0
C C:CYS51 4.1 25.3 1.0
CA C:LYS52 4.5 25.5 1.0
SG C:CYS21 4.5 28.8 1.0
CG C:PRO22 4.5 27.7 1.0
C C:GLY50 4.5 25.5 1.0
CG2 C:VAL49 4.5 26.5 1.0
SG C:CYS48 4.5 28.4 1.0
N C:GLY50 4.6 25.5 1.0
SG C:CYS54 4.6 26.8 1.0
CB C:ARG53 4.7 25.8 1.0
N C:CYS54 4.8 26.8 1.0
C C:LYS52 4.8 25.5 1.0
CA C:GLY50 4.9 25.5 1.0
CA C:ARG53 5.0 25.8 1.0

Iron binding site 7 out of 12 in 7dz8

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Iron binding site 7 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:29.0
occ:1.00
 FE3 C:SF4101 0.0 29.0 1.0
SG C:CYS21 2.1 28.8 1.0
S1 C:SF4101 2.2 29.0 1.0
S4 C:SF4101 2.2 29.0 1.0
S2 C:SF4101 2.3 29.0 1.0
FE2 C:SF4101 2.7 29.0 1.0
FE4 C:SF4101 2.7 29.0 1.0
FE1 C:SF4101 2.7 29.0 1.0
CB C:CYS21 3.3 28.8 1.0
CA C:CYS21 3.8 28.8 1.0
S3 C:SF4101 3.8 29.0 1.0
CD C:PRO22 4.1 27.7 1.0
CB C:VAL25 4.3 29.1 1.0
CG2 C:VAL25 4.5 29.1 1.0
SG C:CYS54 4.5 26.8 1.0
C C:CYS21 4.5 28.8 1.0
SG C:CYS51 4.5 25.3 1.0
CD1 C:LEU26 4.5 29.4 1.0
N C:PRO22 4.5 27.7 1.0
CB C:CYS54 4.6 26.8 1.0
CG C:LEU26 4.7 29.4 1.0
SG C:CYS48 4.7 28.4 1.0
N C:LEU23 4.9 28.6 1.0
N C:CYS21 5.0 28.8 1.0

Iron binding site 8 out of 12 in 7dz8

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Iron binding site 8 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:29.0
occ:1.00
 FE4 C:SF4101 0.0 29.0 1.0
SG C:CYS48 2.1 28.4 1.0
S3 C:SF4101 2.2 29.0 1.0
S2 C:SF4101 2.2 29.0 1.0
S1 C:SF4101 2.3 29.0 1.0
FE1 C:SF4101 2.7 29.0 1.0
FE2 C:SF4101 2.7 29.0 1.0
FE3 C:SF4101 2.7 29.0 1.0
CB C:CYS48 3.3 28.4 1.0
S4 C:SF4101 3.8 29.0 1.0
CA C:CYS48 3.8 28.4 1.0
N C:GLY50 4.1 25.5 1.0
N C:VAL49 4.2 26.5 1.0
C C:CYS48 4.4 28.4 1.0
CG2 C:VAL25 4.5 29.1 1.0
SG C:CYS51 4.5 25.3 1.0
CA C:GLY50 4.5 25.5 1.0
SG C:CYS21 4.6 28.8 1.0
CG2 C:VAL5 4.6 28.1 1.0
SG C:CYS54 4.7 26.8 1.0
N C:CYS51 4.7 25.3 1.0
CB C:VAL25 4.7 29.1 1.0
CG2 C:VAL67 4.7 26.5 1.0
CG1 C:VAL25 4.9 29.1 1.0
CG1 C:VAL67 4.9 26.5 1.0
C C:GLY50 5.0 25.5 1.0

Iron binding site 9 out of 12 in 7dz8

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Iron binding site 9 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:36.1
occ:1.00
 FE1 C:SF4102 0.0 36.1 1.0
SG C:CYS58 2.1 29.2 1.0
S3 C:SF4102 2.2 36.1 1.0
S2 C:SF4102 2.2 36.1 1.0
S4 C:SF4102 2.2 36.1 1.0
FE4 C:SF4102 2.7 36.1 1.0
FE3 C:SF4102 2.7 36.1 1.0
FE2 C:SF4102 2.7 36.1 1.0
CB C:CYS58 3.2 29.2 1.0
CA C:CYS58 3.6 29.2 1.0
S1 C:SF4102 3.8 36.1 1.0
CD C:PRO59 3.8 30.7 1.0
CB C:SER64 4.1 29.6 1.0
OG C:SER64 4.3 29.6 1.0
SG C:CYS14 4.3 33.6 1.0
N C:PRO59 4.4 30.7 1.0
C C:CYS58 4.4 29.2 1.0
CB C:CYS17 4.6 30.6 1.0
SG C:CYS17 4.7 30.6 1.0
N C:CYS58 4.7 29.2 1.0
OG1 C:THR60 4.7 31.5 1.0
N C:VAL65 4.7 28.5 1.0
SG C:CYS11 4.8 33.4 1.0
CG2 C:THR60 4.8 31.5 1.0
N C:SER64 4.8 29.6 1.0
CG1 C:VAL65 4.8 28.5 1.0
CA C:SER64 5.0 29.6 1.0

Iron binding site 10 out of 12 in 7dz8

Go back to Iron Binding Sites List in 7dz8
Iron binding site 10 out of 12 in the State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of State Transition Supercomplex Psi-Lhci-Lhcii From the LHCBM1 Lacking Mutant of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:36.1
occ:1.00
 FE2 C:SF4102 0.0 36.1 1.0
SG C:CYS17 2.1 30.6 1.0
S4 C:SF4102 2.2 36.1 1.0
S1 C:SF4102 2.2 36.1 1.0
S3 C:SF4102 2.2 36.1 1.0
FE3 C:SF4102 2.7 36.1 1.0
FE4 C:SF4102 2.7 36.1 1.0
FE1 C:SF4102 2.7 36.1 1.0
CB C:CYS17 2.8 30.6 1.0
N C:CYS17 3.6 30.6 1.0
S2 C:SF4102 3.8 36.1 1.0
CA C:CYS17 3.8 30.6 1.0
SG C:CYS11 4.4 33.4 1.0
CB C:ALA40 4.5 32.5 1.0
N C:GLN16 4.6 30.7 1.0
SG C:CYS58 4.6 29.2 1.0
SG C:CYS14 4.7 33.6 1.0
C C:GLN16 4.8 30.7 1.0
N C:THR15 4.8 32.3 1.0
C C:CYS17 4.9 30.6 1.0
C C:THR15 5.0 32.3 1.0
N C:VAL18 5.0 30.7 1.0

Reference:

X.W.Pan, R.Tokutsu, A.J.Li, K.J.Takizawa, C.H.Song, K.Murata, T.Yamasaki, Z.F.Liu, J.Minagawa, M.Li. Structural Basis of LHCBM5-Mediated State Transitions in Green Algae To Be Published.
Page generated: Thu Aug 8 04:36:45 2024

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