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Iron in PDB 7emv: Crystal Structure of the Hasap V37G Mutant Capturing Iron-5,10,15- Triphenylporphyrin

Protein crystallography data

The structure of Crystal Structure of the Hasap V37G Mutant Capturing Iron-5,10,15- Triphenylporphyrin, PDB code: 7emv was solved by Y.Shisaka, E.Sakakibara, H.Sugimoto, O.Shoji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.45
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.347, 84.347, 45.735, 90, 90, 90
R / Rfree (%) 12.9 / 17.6

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Hasap V37G Mutant Capturing Iron-5,10,15- Triphenylporphyrin (pdb code 7emv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of the Hasap V37G Mutant Capturing Iron-5,10,15- Triphenylporphyrin, PDB code: 7emv:

Iron binding site 1 out of 1 in 7emv

Go back to Iron Binding Sites List in 7emv
Iron binding site 1 out of 1 in the Crystal Structure of the Hasap V37G Mutant Capturing Iron-5,10,15- Triphenylporphyrin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Hasap V37G Mutant Capturing Iron-5,10,15- Triphenylporphyrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:17.6
occ:1.00
FE A:WXP201 0.0 17.6 1.0
NAI A:WXP201 2.0 17.5 1.0
NE2 A:HIS32 2.0 13.7 1.0
NAX A:WXP201 2.0 19.0 1.0
OH A:TYR75 2.1 15.0 1.0
NAS A:WXP201 2.1 20.5 1.0
NAN A:WXP201 2.1 17.6 1.0
CZ A:TYR75 3.0 13.3 1.0
CE1 A:HIS32 3.0 15.6 1.0
CD2 A:HIS32 3.0 15.4 1.0
CAR A:WXP201 3.0 23.2 1.0
CAH A:WXP201 3.0 19.2 1.0
CAT A:WXP201 3.1 19.6 1.0
CAO A:WXP201 3.1 22.2 1.0
CAM A:WXP201 3.1 21.3 1.0
CAJ A:WXP201 3.1 20.6 1.0
CAE A:WXP201 3.1 18.7 1.0
CAW A:WXP201 3.1 19.4 1.0
CAC A:WXP201 3.4 20.7 1.0
CAA A:WXP201 3.4 16.0 1.0
CAB A:WXP201 3.4 20.6 1.0
CAD A:WXP201 3.4 19.5 1.0
CE1 A:TYR75 3.7 15.1 1.0
CE2 A:TYR75 3.8 15.9 1.0
ND1 A:HIS83 4.1 18.0 1.0
ND1 A:HIS32 4.1 16.9 1.0
CG A:HIS32 4.1 14.7 1.0
CAQ A:WXP201 4.2 24.8 1.0
CAP A:WXP201 4.2 23.4 1.0
CAU A:WXP201 4.2 22.9 1.0
CAG A:WXP201 4.2 17.3 1.0
CAL A:WXP201 4.2 19.0 1.0
CAF A:WXP201 4.2 17.6 1.0
CAK A:WXP201 4.3 18.2 1.0
CAV A:WXP201 4.3 19.4 1.0
CB A:HIS83 4.8 16.3 1.0
CG A:HIS83 4.8 19.0 1.0
CBK A:WXP201 4.8 23.5 1.0
CD1 A:TYR75 4.9 14.6 1.0
CAY A:WXP201 4.9 19.2 1.0
CAZ A:WXP201 4.9 21.9 1.0
CD2 A:TYR75 4.9 14.2 1.0
CE1 A:HIS83 4.9 18.5 1.0

Reference:

Y.Shisaka, E.Sakakibara, K.Suzuki, J.K.Stanfield, H.Onoda, G.Ueda, M.Hatano, H.Sugimoto, O.Shoji. Tetraphenylporphyrin Enters the Ring: First Example of A Complex Between Highly Bulky Porphyrins and A Protein. Chembiochem V. 23 00095 2022.
ISSN: ESSN 1439-7633
PubMed: 35352458
DOI: 10.1002/CBIC.202200095
Page generated: Thu Aug 8 05:19:12 2024

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