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Iron in PDB 7ewk: Barley Photosystem I-Lhci-LHCA6 Supercomplex

Enzymatic activity of Barley Photosystem I-Lhci-LHCA6 Supercomplex

All present enzymatic activity of Barley Photosystem I-Lhci-LHCA6 Supercomplex:
1.97.1.12;

Other elements in 7ewk:

The structure of Barley Photosystem I-Lhci-LHCA6 Supercomplex also contains other interesting chemical elements:

Magnesium (Mg) 149 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Barley Photosystem I-Lhci-LHCA6 Supercomplex (pdb code 7ewk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Barley Photosystem I-Lhci-LHCA6 Supercomplex, PDB code: 7ewk:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 7ewk

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Iron binding site 1 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:92.0
occ:1.00
 FE1 B:SF4802 0.0 92.0 1.0
S2 B:SF4802 2.1 92.0 1.0
S4 B:SF4802 2.1 92.0 1.0
S3 B:SF4802 2.1 92.0 1.0
CB A:CYS573 2.9 78.0 1.0
SG A:CYS573 2.9 78.0 1.0
FE4 B:SF4802 3.0 92.0 1.0
FE3 B:SF4802 3.0 92.0 1.0
FE2 B:SF4802 3.0 92.0 1.0
SG A:CYS582 3.6 79.1 1.0
S1 B:SF4802 3.6 92.0 1.0
CA A:CYS582 4.1 79.1 1.0
CB A:CYS582 4.1 79.1 1.0
CA A:CYS573 4.4 78.0 1.0
NH2 A:ARG723 4.6 75.2 1.0
N A:CYS573 4.7 78.0 1.0
N A:CYS582 4.8 79.1 1.0
O A:PRO572 4.9 79.9 1.0
O A:THR581 4.9 80.0 1.0
C A:PRO572 5.0 79.9 1.0

Iron binding site 2 out of 12 in 7ewk

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Iron binding site 2 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:92.0
occ:1.00
 FE2 B:SF4802 0.0 92.0 1.0
S4 B:SF4802 2.1 92.0 1.0
S3 B:SF4802 2.1 92.0 1.0
S1 B:SF4802 2.1 92.0 1.0
CB B:CYS568 2.9 88.4 1.0
FE1 B:SF4802 3.0 92.0 1.0
FE3 B:SF4802 3.0 92.0 1.0
FE4 B:SF4802 3.0 92.0 1.0
CA B:CYS568 3.6 88.4 1.0
SG B:CYS568 3.6 88.4 1.0
S2 B:SF4802 3.7 92.0 1.0
CD1 A:ILE719 3.7 79.0 1.0
N B:CYS568 3.9 88.4 1.0
CZ3 B:TRP667 4.6 77.2 1.0
CG1 A:ILE719 4.7 79.0 1.0
C B:THR567 4.7 86.0 1.0
CG2 A:ILE719 4.9 79.0 1.0

Iron binding site 3 out of 12 in 7ewk

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Iron binding site 3 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:92.0
occ:1.00
 FE3 B:SF4802 0.0 92.0 1.0
S1 B:SF4802 2.1 92.0 1.0
S2 B:SF4802 2.1 92.0 1.0
S4 B:SF4802 2.1 92.0 1.0
SG A:CYS582 3.0 79.1 1.0
FE1 B:SF4802 3.0 92.0 1.0
FE2 B:SF4802 3.0 92.0 1.0
FE4 B:SF4802 3.0 92.0 1.0
S3 B:SF4802 3.7 92.0 1.0
CD1 B:ILE702 4.2 83.9 1.0
SG B:CYS559 4.5 84.2 1.0
CB A:CYS582 4.5 79.1 1.0
CG2 B:ILE702 4.7 83.9 1.0
CB B:CYS559 4.7 84.2 1.0
CB B:CYS568 4.7 88.4 1.0
NH2 B:ARG706 4.7 83.7 1.0
CZ3 B:TRP667 4.9 77.2 1.0
CE3 B:TRP667 4.9 77.2 1.0

Iron binding site 4 out of 12 in 7ewk

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Iron binding site 4 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:92.0
occ:1.00
 FE4 B:SF4802 0.0 92.0 1.0
S2 B:SF4802 2.1 92.0 1.0
S1 B:SF4802 2.1 92.0 1.0
S3 B:SF4802 2.1 92.0 1.0
FE1 B:SF4802 3.0 92.0 1.0
SG B:CYS559 3.0 84.2 1.0
FE2 B:SF4802 3.0 92.0 1.0
FE3 B:SF4802 3.0 92.0 1.0
S4 B:SF4802 3.7 92.0 1.0
SG A:CYS573 3.9 78.0 1.0
CB B:CYS559 4.0 84.2 1.0
N B:PRO562 4.2 83.0 1.0
C B:GLY561 4.2 84.2 1.0
CD A:PRO576 4.3 80.5 1.0
O B:GLY561 4.3 84.2 1.0
CA B:PRO562 4.4 83.0 1.0
CB B:PRO562 4.4 83.0 1.0
N A:PRO576 4.5 80.5 1.0
CA A:GLY575 4.6 80.4 1.0
C A:GLY575 4.7 80.4 1.0
CA B:GLY561 4.7 84.2 1.0
CD B:PRO562 4.7 83.0 1.0
N B:GLY561 4.8 84.2 1.0
CB A:PRO576 4.9 80.5 1.0

Iron binding site 5 out of 12 in 7ewk

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Iron binding site 5 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:107.4
occ:1.00
 FE1 C:SF4101 0.0 107.4 1.0
S2 C:SF4101 2.1 107.4 1.0
S3 C:SF4101 2.1 107.4 1.0
S4 C:SF4101 2.1 107.4 1.0
FE3 C:SF4101 3.0 107.4 1.0
FE4 C:SF4101 3.0 107.4 1.0
FE2 C:SF4101 3.0 107.4 1.0
SG C:CYS51 3.0 82.9 1.0
O C:CYS51 3.2 82.9 1.0
N C:CYS51 3.6 82.9 1.0
S1 C:SF4101 3.7 107.4 1.0
CD C:PRO22 3.7 89.7 1.0
CG C:PRO22 3.7 89.7 1.0
N C:GLY50 3.8 82.8 1.0
C C:CYS51 4.1 82.9 1.0
CA C:CYS51 4.2 82.9 1.0
CB C:CYS51 4.2 82.9 1.0
N C:VAL49 4.3 87.7 1.0
C C:GLY50 4.3 82.8 1.0
CA C:GLY50 4.5 82.8 1.0
CB C:VAL49 4.6 87.7 1.0
CA C:VAL49 4.8 87.7 1.0
C C:VAL49 4.8 87.7 1.0
SG C:CYS48 5.0 92.6 1.0

Iron binding site 6 out of 12 in 7ewk

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Iron binding site 6 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:107.4
occ:1.00
 FE2 C:SF4101 0.0 107.4 1.0
S4 C:SF4101 2.1 107.4 1.0
S1 C:SF4101 2.1 107.4 1.0
S3 C:SF4101 2.1 107.4 1.0
FE3 C:SF4101 3.0 107.4 1.0
FE1 C:SF4101 3.0 107.4 1.0
SG C:CYS21 3.0 89.6 1.0
FE4 C:SF4101 3.0 107.4 1.0
CD C:PRO22 3.3 89.7 1.0
CA C:CYS21 3.5 89.6 1.0
CB C:CYS21 3.5 89.6 1.0
S2 C:SF4101 3.7 107.4 1.0
CB C:CYS54 3.8 86.0 1.0
N C:PRO22 4.2 89.7 1.0
C C:CYS21 4.3 89.6 1.0
CG C:PRO22 4.4 89.7 1.0
SG C:CYS54 4.6 86.0 1.0
N C:CYS21 4.6 89.6 1.0
CB C:VAL25 4.7 91.4 1.0
CG2 C:VAL25 4.7 91.4 1.0
CA C:CYS54 4.8 86.0 1.0
N C:CYS54 4.9 86.0 1.0
O C:ALA20 4.9 88.5 1.0
O C:CYS51 5.0 82.9 1.0

Iron binding site 7 out of 12 in 7ewk

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Iron binding site 7 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:107.4
occ:1.00
 FE3 C:SF4101 0.0 107.4 1.0
S1 C:SF4101 2.1 107.4 1.0
S2 C:SF4101 2.1 107.4 1.0
S4 C:SF4101 2.1 107.4 1.0
O C:CYS51 2.9 82.9 1.0
SG C:CYS54 2.9 86.0 1.0
FE1 C:SF4101 3.0 107.4 1.0
FE2 C:SF4101 3.0 107.4 1.0
FE4 C:SF4101 3.0 107.4 1.0
CB C:CYS54 3.2 86.0 1.0
S3 C:SF4101 3.7 107.4 1.0
CG2 C:VAL67 3.9 87.7 1.0
C C:CYS51 4.1 82.9 1.0
N C:CYS54 4.1 86.0 1.0
CA C:CYS54 4.3 86.0 1.0
CG1 C:VAL67 4.7 87.7 1.0
CA C:LYS52 4.7 83.5 1.0
C C:LYS52 4.8 83.5 1.0
N C:LYS52 4.9 83.5 1.0
CB C:VAL67 4.9 87.7 1.0
SG C:CYS51 4.9 82.9 1.0
N C:CYS51 4.9 82.9 1.0
N C:ARG53 5.0 86.8 1.0
N C:GLU55 5.0 87.0 1.0

Iron binding site 8 out of 12 in 7ewk

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Iron binding site 8 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:107.4
occ:1.00
 FE4 C:SF4101 0.0 107.4 1.0
S1 C:SF4101 2.1 107.4 1.0
S3 C:SF4101 2.1 107.4 1.0
S2 C:SF4101 2.1 107.4 1.0
SG C:CYS48 2.9 92.6 1.0
FE1 C:SF4101 3.0 107.4 1.0
FE3 C:SF4101 3.0 107.4 1.0
FE2 C:SF4101 3.0 107.4 1.0
CB C:CYS48 3.6 92.6 1.0
S4 C:SF4101 3.7 107.4 1.0
CA C:CYS48 3.8 92.6 1.0
CG2 C:VAL25 3.8 91.4 1.0
CB C:VAL25 4.1 91.4 1.0
CG1 C:VAL25 4.2 91.4 1.0
N C:VAL49 4.3 87.7 1.0
C C:CYS48 4.4 92.6 1.0
N C:GLY50 4.7 82.8 1.0
CG2 C:VAL5 4.8 90.4 1.0
SG C:CYS21 4.8 89.6 1.0

Iron binding site 9 out of 12 in 7ewk

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Iron binding site 9 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:107.4
occ:1.00
 FE1 C:SF4102 0.0 107.4 1.0
S2 C:SF4102 2.1 107.4 1.0
S3 C:SF4102 2.1 107.4 1.0
S4 C:SF4102 2.1 107.4 1.0
FE4 C:SF4102 3.0 107.4 1.0
FE3 C:SF4102 3.0 107.4 1.0
FE2 C:SF4102 3.0 107.4 1.0
CB C:CYS58 3.0 84.9 1.0
CA C:CYS58 3.2 84.9 1.0
SG C:CYS58 3.2 84.9 1.0
S1 C:SF4102 3.7 107.4 1.0
SG C:CYS14 3.8 84.9 1.0
CD C:PRO59 3.9 86.5 1.0
C C:CYS58 4.1 84.9 1.0
N C:CYS58 4.2 84.9 1.0
N C:PRO59 4.3 86.5 1.0
CG2 C:THR60 4.6 87.3 1.0

Iron binding site 10 out of 12 in 7ewk

Go back to Iron Binding Sites List in 7ewk
Iron binding site 10 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:107.4
occ:1.00
 FE2 C:SF4102 0.0 107.4 1.0
S1 C:SF4102 2.1 107.4 1.0
S4 C:SF4102 2.1 107.4 1.0
S3 C:SF4102 2.1 107.4 1.0
FE3 C:SF4102 3.0 107.4 1.0
FE1 C:SF4102 3.0 107.4 1.0
FE4 C:SF4102 3.0 107.4 1.0
SG C:CYS17 3.1 89.5 1.0
CB C:CYS17 3.5 89.5 1.0
S2 C:SF4102 3.7 107.4 1.0
CG1 C:VAL65 4.2 86.1 1.0
N C:CYS17 4.4 89.5 1.0
CA C:CYS17 4.6 89.5 1.0
CB C:VAL65 4.7 86.1 1.0
CE C:MET28 4.7 87.8 1.0
CB C:ALA40 4.7 89.6 1.0
CB C:CYS58 4.8 84.9 1.0

Reference:

L.Shen, K.Tang, W.Wang, C.Wang, H.Wu, Z.Mao, S.An, S.Chang, T.Kuang, J.R.Shen, G.Han, X.Zhang. Architecture of the Chloroplast Psi-Ndh Supercomplex in Hordeum Vulgare. Nature V. 601 649 2022.
ISSN: ESSN 1476-4687
PubMed: 34879391
DOI: 10.1038/S41586-021-04277-6
Page generated: Thu Aug 8 05:28:43 2024

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