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Iron in PDB 7fjg: Crystal Structure of Butanol Dehydrogenase A (Yqdh) in Complex with Partial Nadh From Fusobacterium Nucleatum

Protein crystallography data

The structure of Crystal Structure of Butanol Dehydrogenase A (Yqdh) in Complex with Partial Nadh From Fusobacterium Nucleatum, PDB code: 7fjg was solved by X.Bai, J.Lan, L.Wang, T.Bu, Y.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.53 / 2.72
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 64.426, 79.351, 212.932, 90, 90, 90
R / Rfree (%) 20.7 / 27.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Butanol Dehydrogenase A (Yqdh) in Complex with Partial Nadh From Fusobacterium Nucleatum (pdb code 7fjg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Butanol Dehydrogenase A (Yqdh) in Complex with Partial Nadh From Fusobacterium Nucleatum, PDB code: 7fjg:

Iron binding site 1 out of 1 in 7fjg

Go back to Iron Binding Sites List in 7fjg
Iron binding site 1 out of 1 in the Crystal Structure of Butanol Dehydrogenase A (Yqdh) in Complex with Partial Nadh From Fusobacterium Nucleatum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Butanol Dehydrogenase A (Yqdh) in Complex with Partial Nadh From Fusobacterium Nucleatum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:100.3
occ:1.00
HD2 A:HIS272 2.1 81.0 1.0
OE1 A:GLU206 2.7 49.0 1.0
CD2 A:HIS272 2.8 67.2 1.0
HE1 A:HIS286 2.9 66.2 1.0
HE2 A:MET290 3.1 68.4 1.0
HE2 A:HIS286 3.3 64.8 1.0
CD A:GLU206 3.5 54.1 1.0
OE2 A:GLU206 3.6 50.0 1.0
CE1 A:HIS286 3.6 54.9 1.0
NE2 A:HIS272 3.6 74.1 1.0
HE2 A:HIS272 3.7 89.3 1.0
NE2 A:HIS286 3.7 53.7 1.0
HB2 A:HIS272 3.7 67.8 1.0
CG A:HIS272 3.7 68.6 1.0
CE A:MET290 4.0 56.7 1.0
CB A:HIS272 4.3 56.2 1.0
HE1 A:MET290 4.3 68.4 1.0
HG3 A:MET290 4.5 45.8 1.0
HA A:HIS203 4.5 44.6 1.0
HB3 A:SER202 4.5 51.4 1.0
HA A:HIS272 4.5 51.3 1.0
HE3 A:MET290 4.6 68.4 1.0
HZ3 A:TRP269 4.7 78.7 1.0
CE1 A:HIS272 4.7 71.3 1.0
SD A:MET290 4.8 48.8 1.0
ND1 A:HIS272 4.8 53.0 1.0
HE3 A:TRP269 4.8 73.2 1.0
HB2 A:SER202 4.9 51.4 1.0
ND1 A:HIS286 4.9 58.0 1.0
CG A:GLU206 4.9 46.5 1.0
CA A:HIS272 5.0 42.4 1.0

Reference:

X.Bai, J.Lan, L.Wang, T.Bu, Y.Xu. Crystal Structure of Butanol Dehydrogenase A (Yqdh) in Complex with Partial Nadh From Fusobacterium Nucleatum To Be Published.
Page generated: Thu Aug 8 05:40:18 2024

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