Iron in PDB 7jz6: The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli

All present enzymatic activity of The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli:
1.11.1.21;

The binding sites of Iron atom in the The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli (pdb code 7jz6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli, PDB code: 7jz6:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1001 b:0.0 occ:1.00 FE A:HEM1001 0.0 0.0 1.0 NC A:HEM1001 1.9 0.0 1.0 NA A:HEM1001 2.1 0.0 1.0 ND A:HEM1001 2.1 0.0 1.0 NB A:HEM1001 2.1 0.0 1.0 NE2 A:HIS267 2.5 0.0 1.0 C4C A:HEM1001 3.0 0.0 1.0 C1C A:HEM1001 3.0 0.0 1.0 C1D A:HEM1001 3.0 0.0 1.0 C4D A:HEM1001 3.1 0.0 1.0 C1A A:HEM1001 3.1 0.0 1.0 C4A A:HEM1001 3.1 0.0 1.0 C4B A:HEM1001 3.1 0.0 1.0 C1B A:HEM1001 3.1 0.0 1.0 O A:HOH1103 3.1 0.0 1.0 CD2 A:HIS267 3.3 0.0 1.0 CHD A:HEM1001 3.4 0.0 1.0 CHA A:HEM1001 3.4 0.0 1.0 CHC A:HEM1001 3.4 0.0 1.0 CHB A:HEM1001 3.5 0.0 1.0 CE1 A:HIS267 3.5 0.0 1.0 C3C A:HEM1001 4.2 0.0 1.0 C2C A:HEM1001 4.2 0.0 1.0 C2D A:HEM1001 4.2 0.0 1.0 C3D A:HEM1001 4.3 0.0 1.0 C3A A:HEM1001 4.3 0.0 1.0 C2A A:HEM1001 4.3 0.0 1.0 C3B A:HEM1001 4.3 0.0 1.0 C2B A:HEM1001 4.3 0.0 1.0 CG A:HIS267 4.5 0.0 1.0 ND1 A:HIS267 4.6 0.0 1.0 NE1 A:TRP105 4.7 0.0 1.0 O A:HOH1105 4.7 0.0 1.0 CD1 A:TRP105 4.9 0.0 1.0 O A:HOH1102 5.0 0.0 1.0

Iron binding site 2 out of 4 in the The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1001 b:0.0 occ:1.00 FE B:HEM1001 0.0 0.0 1.0 NC B:HEM1001 1.9 0.0 1.0 ND B:HEM1001 2.1 0.0 1.0 NA B:HEM1001 2.1 0.0 1.0 NB B:HEM1001 2.1 0.0 1.0 NE2 B:HIS267 2.5 0.0 1.0 C4C B:HEM1001 3.0 0.0 1.0 C1C B:HEM1001 3.0 0.0 1.0 C1D B:HEM1001 3.0 0.0 1.0 C4D B:HEM1001 3.1 0.0 1.0 C4A B:HEM1001 3.1 0.0 1.0 C4B B:HEM1001 3.1 0.0 1.0 C1B B:HEM1001 3.1 0.0 1.0 C1A B:HEM1001 3.1 0.0 1.0 O B:HOH1102 3.1 0.0 1.0 CD2 B:HIS267 3.4 0.0 1.0 CHD B:HEM1001 3.4 0.0 1.0 CHC B:HEM1001 3.4 0.0 1.0 CHA B:HEM1001 3.4 0.0 1.0 CHB B:HEM1001 3.4 0.0 1.0 CE1 B:HIS267 3.5 0.0 1.0 C3C B:HEM1001 4.2 0.0 1.0 C2C B:HEM1001 4.2 0.0 1.0 C2D B:HEM1001 4.2 0.0 1.0 C3D B:HEM1001 4.3 0.0 1.0 C3A B:HEM1001 4.3 0.0 1.0 C3B B:HEM1001 4.3 0.0 1.0 C2B B:HEM1001 4.3 0.0 1.0 C2A B:HEM1001 4.3 0.0 1.0 CG B:HIS267 4.6 0.0 1.0 ND1 B:HIS267 4.6 0.0 1.0 NE1 B:TRP105 4.7 0.0 1.0 O B:HOH1104 4.7 0.0 1.0 CD1 B:TRP105 4.8 0.0 1.0 O B:HOH1101 5.0 0.0 1.0

Iron binding site 3 out of 4 in the The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1001 b:0.0 occ:1.00 FE C:HEM1001 0.0 0.0 1.0 NC C:HEM1001 2.0 0.0 1.0 ND C:HEM1001 2.1 0.0 1.0 NA C:HEM1001 2.1 0.0 1.0 NB C:HEM1001 2.1 0.0 1.0 NE2 C:HIS267 2.5 0.0 1.0 C4C C:HEM1001 3.0 0.0 1.0 C1C C:HEM1001 3.0 0.0 1.0 C1D C:HEM1001 3.0 0.0 1.0 C4D C:HEM1001 3.1 0.0 1.0 C4A C:HEM1001 3.1 0.0 1.0 C4B C:HEM1001 3.1 0.0 1.0 C1A C:HEM1001 3.1 0.0 1.0 C1B C:HEM1001 3.1 0.0 1.0 O C:HOH1102 3.1 0.0 1.0 CD2 C:HIS267 3.3 0.0 1.0 CHD C:HEM1001 3.4 0.0 1.0 CHC C:HEM1001 3.4 0.0 1.0 CHB C:HEM1001 3.4 0.0 1.0 CHA C:HEM1001 3.4 0.0 1.0 CE1 C:HIS267 3.5 0.0 1.0 C3C C:HEM1001 4.2 0.0 1.0 C2C C:HEM1001 4.2 0.0 1.0 C2D C:HEM1001 4.2 0.0 1.0 C3D C:HEM1001 4.3 0.0 1.0 C3A C:HEM1001 4.3 0.0 1.0 C2A C:HEM1001 4.3 0.0 1.0 C3B C:HEM1001 4.3 0.0 1.0 C2B C:HEM1001 4.3 0.0 1.0 CG C:HIS267 4.6 0.0 1.0 NE1 C:TRP105 4.6 0.0 1.0 ND1 C:HIS267 4.6 0.0 1.0 CD1 C:TRP105 4.7 0.0 1.0 O C:HOH1104 4.7 0.0 1.0 O C:HOH1101 5.0 0.0 1.0

Iron binding site 4 out of 4 in the The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Cryo-Em Structure of the Catalase-Peroxidase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe1001 b:0.0 occ:1.00 FE D:HEM1001 0.0 0.0 1.0 NC D:HEM1001 2.0 0.0 1.0 ND D:HEM1001 2.1 0.0 1.0 NA D:HEM1001 2.1 0.0 1.0 NB D:HEM1001 2.1 0.0 1.0 NE2 D:HIS267 2.5 0.0 1.0 C4C D:HEM1001 3.0 0.0 1.0 C1C D:HEM1001 3.0 0.0 1.0 C1D D:HEM1001 3.0 0.0 1.0 C4D D:HEM1001 3.1 0.0 1.0 C4A D:HEM1001 3.1 0.0 1.0 C1A D:HEM1001 3.1 0.0 1.0 C1B D:HEM1001 3.1 0.0 1.0 C4B D:HEM1001 3.1 0.0 1.0 O D:HOH1102 3.1 0.0 1.0 CD2 D:HIS267 3.3 0.0 1.0 CHD D:HEM1001 3.4 0.0 1.0 CHA D:HEM1001 3.4 0.0 1.0 CHC D:HEM1001 3.4 0.0 1.0 CHB D:HEM1001 3.4 0.0 1.0 CE1 D:HIS267 3.5 0.0 1.0 C3C D:HEM1001 4.2 0.0 1.0 C2C D:HEM1001 4.2 0.0 1.0 C2D D:HEM1001 4.2 0.0 1.0 C3D D:HEM1001 4.3 0.0 1.0 C3A D:HEM1001 4.3 0.0 1.0 C2A D:HEM1001 4.3 0.0 1.0 C2B D:HEM1001 4.3 0.0 1.0 C3B D:HEM1001 4.3 0.0 1.0 CG D:HIS267 4.5 0.0 1.0 ND1 D:HIS267 4.6 0.0 1.0 NE1 D:TRP105 4.6 0.0 1.0 O D:HOH1104 4.7 0.0 1.0 CD1 D:TRP105 4.7 0.0 1.0 O D:HOH1101 5.0 0.0 1.0

C.C.Su, M.Lyu, C.E.Morgan, J.R.Bolla, C.V.Robinson, E.W.Yu. A 'Build and Retrieve' Methodology to Simultaneously Solve Cryo-Em Structures of Membrane Proteins. Nat.Methods V. 18 69 2021.
ISSN: ESSN 1548-7105
PubMed: 33408407
DOI: 10.1038/S41592-020-01021-2