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Iron in PDB 7k26: Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate

Enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate

All present enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate, PDB code: 7k26 was solved by J.B.Bailey, L.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.99 / 2.70
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 131.570, 131.570, 306.560, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 25.4

Other elements in 7k26:

The structure of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate also contains other interesting chemical elements:

Sodium (Na) 7 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate (pdb code 7k26). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate, PDB code: 7k26:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 1 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:83.2
occ:0.75
 OE2 A:GLU62 2.5 64.4 1.0
OE1 A:GLU62 2.5 65.0 1.0
OE1 A:GLU27 2.8 62.5 1.0
CD A:GLU62 2.8 62.1 1.0
OE1 A:GLN141 2.9 59.6 1.0
ND1 A:HIS65 2.9 78.7 1.0
CE1 A:HIS65 3.6 78.8 1.0
CD A:GLU27 3.7 59.9 1.0
OE2 A:GLU27 3.8 63.4 1.0
CG A:HIS65 4.0 76.5 1.0
CG1 A:VAL110 4.0 44.3 1.0
CD A:GLN141 4.1 56.4 1.0
OE2 A:GLU107 4.1 57.5 1.0
CG A:GLU62 4.3 57.4 1.0
CB A:HIS65 4.4 67.1 1.0
NE2 A:HIS65 4.8 79.3 1.0
NE2 A:GLN141 4.8 55.1 1.0
CB A:GLU62 5.0 54.8 1.0
OE1 A:GLU107 5.0 56.0 1.0
CA A:GLU62 5.0 50.1 1.0
CD A:GLU107 5.0 56.0 1.0
CB A:VAL110 5.0 50.4 1.0

Iron binding site 2 out of 12 in 7k26

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Iron binding site 2 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:0.3
occ:0.75
 OE2 B:GLU62 2.5 55.9 1.0
OE1 B:GLU27 2.6 61.5 1.0
ND1 B:HIS65 2.9 64.0 1.0
OE1 B:GLU62 3.0 58.8 1.0
CD B:GLU62 3.1 56.7 1.0
OE1 B:GLN141 3.3 60.4 1.0
CD B:GLU27 3.4 56.8 1.0
OE2 B:GLU27 3.6 53.4 1.0
CE1 B:HIS65 3.6 64.7 1.0
CG B:HIS65 3.8 60.9 1.0
CG1 B:VAL110 4.0 46.2 1.0
CB B:HIS65 4.1 54.7 1.0
CD B:GLN141 4.4 55.6 1.0
CG B:GLU62 4.5 54.1 1.0
NE2 B:HIS65 4.8 63.6 1.0
OE2 B:GLU107 4.8 61.8 1.0
CG B:GLU27 4.8 53.8 1.0
CD2 B:HIS65 4.9 62.7 1.0
CA B:GLU62 5.0 44.2 1.0
NE2 B:GLN141 5.0 57.4 1.0

Iron binding site 3 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 3 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:0.8
occ:0.75
 CD2 C:HIS65 2.4 79.5 1.0
OE1 C:GLU27 2.7 66.4 1.0
OE2 C:GLU62 2.8 62.8 1.0
NE2 C:GLN141 3.0 55.1 1.0
OE1 C:GLU62 3.0 62.7 1.0
CD C:GLU62 3.2 62.2 1.0
NE2 C:HIS65 3.4 79.8 1.0
CG C:HIS65 3.4 77.2 1.0
OE2 C:GLU27 3.4 68.1 1.0
CD C:GLU27 3.5 65.9 1.0
CB C:HIS65 3.9 68.6 1.0
CD C:GLN141 4.0 52.9 1.0
CG1 C:VAL110 4.2 57.4 1.0
CE1 C:HIS65 4.5 79.8 1.0
ND1 C:HIS65 4.5 78.7 1.0
OE1 C:GLU107 4.7 65.1 1.0
CG C:GLU62 4.7 58.5 1.0
CD2 C:TYR137 4.7 55.4 1.0
OE1 C:GLN141 4.8 54.7 1.0
CG C:GLN141 4.8 48.3 1.0
CG C:GLU27 4.9 62.5 1.0
CE2 C:TYR137 5.0 55.1 1.0

Iron binding site 4 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 4 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:97.1
occ:0.75
 OE1 D:GLU27 2.2 60.6 1.0
OE2 D:GLU62 2.7 61.7 1.0
OE1 D:GLU62 3.0 62.0 1.0
CD D:GLU27 3.1 58.3 1.0
ND1 D:HIS65 3.1 67.2 1.0
CD D:GLU62 3.2 60.0 1.0
OE1 D:GLN141 3.2 56.1 1.0
OE2 D:GLU27 3.3 60.1 1.0
CG D:HIS65 3.7 66.2 1.0
CE1 D:HIS65 3.7 67.6 1.0
CG1 D:VAL110 4.0 44.1 1.0
CB D:HIS65 4.0 58.3 1.0
CD D:GLN141 4.2 50.0 1.0
NE2 D:HIS65 4.4 68.2 1.0
CD2 D:HIS65 4.4 68.5 1.0
CG D:GLU27 4.5 54.5 1.0
CG D:GLU62 4.7 56.0 1.0
NE2 D:GLN141 4.8 44.8 1.0
OE2 D:GLU107 4.8 59.4 1.0
CD2 D:TYR137 4.8 41.5 1.0
CB D:GLU27 5.0 48.4 1.0

Iron binding site 5 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 5 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:93.5
occ:0.75
 OE1 E:GLU27 2.4 66.2 1.0
OE2 E:GLU62 2.6 63.8 1.0
ND1 E:HIS65 2.9 79.5 1.0
OE1 E:GLU62 3.0 64.4 1.0
OE1 E:GLN141 3.1 58.1 1.0
CD E:GLU62 3.2 62.8 1.0
CD E:GLU27 3.2 64.2 1.0
OE2 E:GLU27 3.2 66.4 1.0
CE1 E:HIS65 3.7 79.7 1.0
CG E:HIS65 3.8 77.1 1.0
CG1 E:VAL110 4.0 56.0 1.0
CB E:HIS65 4.1 66.4 1.0
CD E:GLN141 4.1 59.1 1.0
CG E:GLU62 4.6 59.5 1.0
CG E:GLU27 4.6 60.0 1.0
NE2 E:HIS65 4.8 79.9 1.0
OE2 E:GLU107 4.8 68.6 1.0
CD2 E:TYR137 4.8 62.1 1.0
NE2 E:GLN141 4.8 62.5 1.0
CD2 E:HIS65 4.8 79.0 1.0
CE2 E:TYR137 5.0 61.8 1.0

Iron binding site 6 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 6 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:0.4
occ:0.75
 OE1 F:GLU27 2.5 56.2 1.0
OE2 F:GLU62 2.7 52.8 1.0
ND1 F:HIS65 2.8 64.5 1.0
OE1 F:GLN141 2.9 55.1 1.0
CD F:GLU27 3.3 53.7 1.0
OE2 F:GLU27 3.3 54.8 1.0
OE1 F:GLU62 3.4 60.8 1.0
CD F:GLU62 3.4 55.4 1.0
CE1 F:HIS65 3.5 64.5 1.0
CG F:HIS65 3.8 64.3 1.0
CG1 F:VAL110 3.8 48.1 1.0
CD F:GLN141 3.9 55.7 1.0
CB F:HIS65 4.2 56.8 1.0
NE2 F:GLN141 4.6 57.6 1.0
NE2 F:HIS65 4.6 66.0 1.0
CG F:GLU27 4.7 52.3 1.0
CD2 F:TYR137 4.7 49.5 1.0
CD2 F:HIS65 4.8 65.1 1.0
OE2 F:GLU107 4.8 77.7 1.0
CG F:GLN141 4.8 52.9 1.0
CG F:GLU62 4.9 50.3 1.0
CD1 F:LEU114 5.0 42.9 1.0
CE2 F:TYR137 5.0 53.3 1.0

Iron binding site 7 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 7 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:0.8
occ:0.75
 OE1 G:GLU27 2.6 62.6 1.0
ND1 G:HIS65 2.8 74.4 1.0
OE1 G:GLU62 2.9 74.2 1.0
OE1 G:GLN141 3.0 70.1 1.0
OE2 G:GLU62 3.1 74.7 1.0
CD G:GLU62 3.3 72.4 1.0
CD G:GLU27 3.4 57.7 1.0
OE2 G:GLU27 3.4 63.3 1.0
CE1 G:HIS65 3.5 74.1 1.0
CG G:HIS65 3.8 73.2 1.0
CG1 G:VAL110 3.9 52.9 1.0
CD G:GLN141 4.1 68.3 1.0
CB G:HIS65 4.2 67.8 1.0
OE2 G:GLU107 4.5 58.6 1.0
NE2 G:HIS65 4.6 73.5 1.0
CG G:GLU62 4.8 68.7 1.0
CD2 G:HIS65 4.8 73.4 1.0
NE2 G:GLN141 4.9 69.1 1.0
CG G:GLU27 4.9 52.9 1.0
CD2 G:TYR137 4.9 60.4 1.0
CB G:VAL110 4.9 53.6 1.0
CG G:GLN141 5.0 65.3 1.0

Iron binding site 8 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 8 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:1.0
occ:0.75
 OE1 H:GLU62 2.6 69.0 1.0
ND1 H:HIS65 2.7 83.2 1.0
OE1 H:GLU27 2.8 68.9 1.0
OE1 H:GLN141 2.9 72.1 1.0
OE2 H:GLU62 2.9 67.2 1.0
CD H:GLU62 3.1 67.1 1.0
CE1 H:HIS65 3.2 83.2 1.0
OE2 H:GLU27 3.6 70.3 1.0
CD H:GLU27 3.6 68.3 1.0
CG H:HIS65 3.8 81.7 1.0
OE1 H:GLU107 3.9 80.8 1.0
CD H:GLN141 4.0 67.1 1.0
CG1 H:VAL110 4.2 58.3 1.0
CB H:HIS65 4.4 76.3 1.0
NE2 H:HIS65 4.4 82.7 1.0
OE2 H:GLU107 4.5 79.5 1.0
CG H:GLU62 4.6 61.2 1.0
NE2 H:GLN141 4.7 66.2 1.0
CD H:GLU107 4.7 78.6 1.0
CD2 H:HIS65 4.7 82.4 1.0

Iron binding site 9 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 9 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:0.3
occ:0.75
 ND1 I:HIS65 2.5 69.7 1.0
OE1 I:GLU27 2.6 73.0 1.0
OE2 I:GLU62 2.6 63.6 1.0
OE1 I:GLU62 3.1 63.9 1.0
CD I:GLU62 3.2 62.4 1.0
CE1 I:HIS65 3.2 71.0 1.0
CD I:GLU27 3.4 71.3 1.0
OE1 I:GLN141 3.4 66.0 1.0
OE2 I:GLU27 3.5 73.2 1.0
CG I:HIS65 3.5 67.8 1.0
CB I:HIS65 4.0 61.2 1.0
CG1 I:VAL110 4.2 62.4 1.0
NE2 I:HIS65 4.3 70.5 1.0
CD I:GLN141 4.5 65.4 1.0
CD2 I:HIS65 4.5 68.8 1.0
CG I:GLU62 4.7 60.4 1.0
CG I:GLU27 4.8 68.2 1.0
OE1 I:GLU107 4.8 83.0 1.0
CA I:GLU62 4.9 58.0 1.0

Iron binding site 10 out of 12 in 7k26

Go back to Iron Binding Sites List in 7k26
Iron binding site 10 out of 12 in the Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structure of Human H-Chain Ferritin Variant Infused with Sodium Acrylate within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:0.4
occ:0.75
 OE1 J:GLU62 2.6 77.2 1.0
OE2 J:GLU62 2.9 76.6 1.0
OE1 J:GLU27 3.1 74.8 1.0
CD J:GLU62 3.1 74.3 1.0
CD2 J:HIS65 3.1 91.1 1.0
OE1 J:GLN141 3.2 66.0 1.0
NE2 J:HIS65 3.7 90.8 1.0
CG J:HIS65 3.8 89.9 1.0
CD J:GLU27 3.9 73.8 1.0
OE2 J:GLU27 3.9 75.1 1.0
CD J:GLN141 3.9 67.0 1.0
NE2 J:GLN141 4.0 69.9 1.0
OE2 J:GLU107 4.1 68.9 1.0
CG1 J:VAL110 4.3 60.9 1.0
CB J:HIS65 4.4 83.5 1.0
CG J:GLU62 4.6 66.5 1.0
CE1 J:HIS65 4.6 91.1 1.0
ND1 J:HIS65 4.7 91.7 1.0

Reference:

K.Han, J.B.Bailey, L.Zhang, F.A.Tezcan. Anisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks. J.Am.Chem.Soc. V. 142 19402 2020.
ISSN: ESSN 1520-5126
PubMed: 33124805
DOI: 10.1021/JACS.0C10065
Page generated: Thu Aug 8 06:00:38 2024

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